Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2676	PP_2677	PP_2678	PP_2679	PP_2680
temperature shift	Temperature shift 30_to_25; with MOPS	+0.1	-3.6	-0.1	-0.1	-0.3
pH	Valerolactone (C) pH 6.5	-0.9	-1.6	-0.8	-0.9	+0.7
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	-0.7	-1.4	-0.1	-0.7
carbon source	1-Pentanol (C)	-1.1	+0.0	-0.1	-1.9	+0.1
carbon source	2-methyl-1-butanol (C)	-1.8	+0.0	+0.3	-1.6	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.2	-0.0	-2.0	-0.1	-0.3
pH	Valerolactone (C) pH 6.5	-0.9	-1.3	-0.1	-0.6	+0.4
carbon source	3-methyl-3-buten-1-ol 0.25 vol% (C)	-1.8	+0.4	+0.5	-2.7	+1.2
nitrogen source	2,6-diaminopimelic (N)	-0.1	-0.5	-0.8	-0.4	-0.6
carbon source	2-methyl-1-butanol (C)	-1.5	+0.4	+0.3	-1.5	+0.1
nitrogen source	nitrite (N)	-0.1	-0.8	-0.7	+0.2	-0.8
carbon source	1-Pentanol (C)	-1.0	+0.0	+0.3	-1.4	+0.3
carbon source	Ethanol (C)	-0.7	-0.3	+0.4	-0.5	-0.6
carbon source	DL-3-Hydroxyisobutyric (C)	-0.1	-1.2	+0.4	-0.3	-0.5
carbon source	1,2-Propanediol (C)	-0.6	+0.5	+0.3	-0.3	-1.5
phage	P. putida Sci small MOI 0.1	-0.2	-1.0	+0.4	+0.1	-0.9
nitrogen source	D-2-Aminobutyric (N)	-0.2	-1.9	+0.3	+0.4	+0.3
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	-1.6	-0.3	+1.3	-0.1
carbon source	Delta-Decalactone (C)	+0.6	-0.2	+0.3	+0.8	-2.5
carbon source	3-methyl-3-buten-1-ol 0.1 vol% (C)	-1.4	+1.1	+0.8	-2.4	+1.0
stress	R2A with Fusaric 480 ug/mL	-0.1	-1.5	+0.5	+0.2	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	+0.6	-0.6	+0.0	-1.1
phage	P. putida Sci Big MOI 0.1	+0.3	-2.0	+0.4	-0.0	+0.6
nitrogen source	Urea (N)	+0.2	+1.1	-0.1	+0.1	-0.9
carbon source	3-methyl-1-butanol 0.25 vol% (C)	-0.5	+0.8	-0.1	-0.4	+0.6
carbon source	1,3-Butandiol (C)	-0.9	+0.2	+0.3	-0.0	+1.0
carbon source	3-methyl-1-butanol 0.1 vol% (C)	-0.1	+0.4	+0.3	-1.1	+1.2
carbon source	Delta-Undecalactone (C)	+0.5	+0.3	+0.2	+1.1	-1.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	+1.2	-0.1	+0.3	-0.8
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	-0.3	-0.4	+1.4	+0.2