Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_2663 and PP_2664 overlap by 32 nucleotidesPP_2664 and PP_2665 are separated by 45 nucleotidesPP_2665 and PP_2666 are separated by 54 nucleotidesPP_2666 and PP_2667 are separated by 307 nucleotides PP_2663: PP_2663 - conserved protein of unknown function, at 3,050,169 to 3,051,332 _2663 PP_2664: PP_2664 - putative hybrid sensor and regulator, histidine kinase, at 3,051,301 to 3,053,199 _2664 PP_2665: PP_2665 - Glycerol metabolism activator, at 3,053,245 to 3,053,910 _2665 PP_2666: PP_2666 - conserved exported protein of unknown function, at 3,053,965 to 3,054,525 _2666 PP_2667: PP_2667 - ABC transporter, at 3,054,833 to 3,055,624 _2667
Group Condition PP_2663 PP_2664 PP_2665 PP_2666 PP_2667
carbon source 2-methyl-1-butanol (C) -0.3 -1.4 -5.1 -1.4 -1.6
carbon source 2-methyl-1-butanol (C) -0.5 -1.4 -4.5 -0.7 -1.5
carbon source 1,3-Hexanediol (C) +0.8 -0.0 -5.2 -0.8 -0.9
carbon source Ethyl decanoate (C) +0.2 -0.4 -5.3 -0.5 -0.1
carbon source Ethyl decanoate (C) -0.1 -0.3 -4.7 -0.6 +0.0
carbon source 1-Pentanol (C) -0.3 -0.5 -2.8 -0.7 -1.1
carbon source 3-methyl-3-buten-1-ol 0.1 vol% (C) +0.6 +0.5 -4.0 +0.1 -2.3
carbon source 1,3-Hexanediol (C) +0.6 -0.3 -4.1 -0.3 -1.0
carbon source 3-methyl-3-buten-1-ol 0.25 vol% (C) +0.4 +0.2 -2.4 +0.0 -3.2
pH Valerolactone (C) pH 6.5 -0.9 -0.8 -1.2 -1.0 -1.0
carbon source 1,2-Propanediol (C) -0.5 -0.7 -2.2 -0.5 -0.7
carbon source 3-Hydroxyhexanoic (C) +0.1 +0.2 -4.7 -0.2 +0.0
carbon source 1-Pentanol (C) +0.3 -0.2 -2.6 -0.3 -1.5
carbon source 1-Pentanol (C) +0.1 -0.2 -2.9 -0.5 -0.8
carbon source 3-methyl-3-butenol (C) +0.3 -0.1 -3.0 -0.6 -0.9
carbon source 3-methyl-1-butanol 0.1 vol% (C) +0.5 -0.0 -3.4 -0.2 -1.0
carbon source 3-methyl-3-butenol (C) +0.4 -0.0 -2.7 -0.6 -0.8
carbon source 3-Hydroxyhexanoic (C) +0.1 +0.1 -3.7 -0.2 -0.1
carbon source 3-methyl-1-butanol 0.25 vol% (C) +0.6 +0.6 -2.1 +0.8 -1.3
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 -0.5 +2.3 +1.0 -0.3
carbon source DL-2-Aminoadipic 10 mM (C) +0.2 +0.4 +2.6 +2.1 -0.1
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 +0.2 +3.6 +2.4 -0.2
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 -0.1 +4.9 +2.9 +0.0
carbon source Delta-Undecalactone (C) +1.8 +1.7 +1.4 +1.7 +0.8
carbon source Delta-Nonalactone (C) +2.8 +2.3 +2.2 +2.1 +0.4
carbon source Delta-Decalactone (C) +3.1 +2.9 +3.0 +2.3 +0.8
carbon source Delta-Undecalactone (C) +2.8 +2.8 +2.8 +2.4 +1.2
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 -0.5 +8.9 +4.6 -0.3
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 -0.5 +9.0 +4.6 -0.2
carbon source Delta-Decalactone (C) +4.2 +4.0 +3.8 +3.1 +0.4
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