Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2647	PP_2648	PP_2649	PP_2650	PP_2651
carbon source	carbon source 3-O-methyl-glucose 10 mM	+0.2	-0.6	-0.6	-1.6	-0.2
carbon source	Myristic (C)	-0.8	-1.0	-0.0	-0.9	-0.0
stress	R2A with Fusaric 240 ug/mL	-0.1	-0.1	-0.1	-1.8	-0.4
carbon source	carbon source 4-vinylphenol 0.01 mM	+0.2	-0.1	-1.1	-1.2	-0.2
carbon source	carbon source 2-Deoxy-D-glucose 50 mM	+0.4	-0.6	-0.4	-1.3	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.5	+0.6	+0.3	-1.1	-0.9
pH	pH 7	+0.5	-1.0	+0.0	-0.8	-0.4
nitrogen source	D-2-Aminobutyric (N)	-0.2	-0.7	+0.3	-1.2	+0.3
temperature shift	Temperature shift 30_to_21; with MOPS	-0.2	+0.6	-0.2	-1.7	+0.0
carbon source	carbon source 2-Deoxy-D-glucose 100 mM	+0.5	-0.4	-0.6	-0.5	-0.3
pH	Growth at pH7 and (C) Trisodium citrate	+0.2	-0.1	-1.4	+0.6	-0.6
nitrogen source	Urea (N); with MOPS	+0.3	-1.1	+0.1	-0.6	+0.1
phage	P. putida PUT 7 MOI 1	+0.2	+0.5	+0.3	-1.5	-0.0
stress	MOPS minimal media_Glucose20mM with Fluoroacetate 80 mM	+0.1	+0.6	-0.1	-1.3	+0.2
temperature shift	Temperature shift 10_to_25; with MOPS	+0.4	+0.3	-1.1	+0.3	-0.3
pH	pH 5	+0.3	-0.3	+0.6	-0.6	-0.5
pH	Growth at pH7 and (C) D-Glucose	+0.3	+0.2	+0.6	-0.9	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.4	+0.4	-0.9	+0.3	+0.2
carbon source	D-Glucose (C); with MOPS	-0.3	+0.6	-1.0	+0.5	-0.0
nitrogen source	nitrogen source nitrate 20mM	-0.2	-1.0	+0.3	+0.9	+0.1
phage	P. putida Sci small MOI 0.1	+0.3	-0.9	+1.1	+0.5	-0.7
stress	R2A with Polymyxin B sulfate 0.001 mg/ml	-0.8	+0.3	+1.2	-0.2	-0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	+0.4	+1.1	-0.6	-0.4
nitrogen source	NAG (N); with MOPS	+0.4	+0.6	-1.4	+1.3	-0.3
carbon source	Valerolactone (C)	-0.2	+0.5	+1.1	-0.0	-0.5
phage	P. putida Missley MOI 0.1	-0.4	+1.0	-0.3	+0.0	+0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	-0.2	+1.6	-0.1	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.4	+0.7	+0.7	-0.3	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.3	+0.1	-0.4	+1.1	+0.5
temperature shift	Temperature shift 30_to_25; with MOPS	+0.2	+0.6	+0.6	+0.5	+0.4