Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2600	PP_2601	PP_2602	PP_2603	PP_2604
phage	P. putida Missley MOI 0.1	-0.7	-0.2	-1.0	-0.5	-0.5
carbon source	3-methyl-1-butanol 0.25 vol% (C)	-0.2	-0.5	-0.6	-1.0	-0.3
nitrogen source	Propandiamine (N)	-0.0	-0.8	-0.4	-0.8	-0.1
pH	Growth at pH6 and (C) D-Glucose	-0.0	-0.7	-0.5	-0.7	-0.4
carbon source	3-methyl-1-butanol 0.1 vol% (C)	-0.4	-0.0	-0.1	-0.8	-0.5
nitrogen source	no extra (N); with MOPS	-0.3	-0.3	-0.1	-0.8	-0.2
pH	Growth at pH8 and (C) D-Glucose	-0.2	-0.8	-0.6	-0.3	+0.1
carbon source	3-methyl-3-buten-1-ol 0.25 vol% (C)	-0.2	-0.2	-0.4	-0.4	-0.4
pH	Growth at pH9 and (C) D-Glucose	-0.3	-0.4	-0.6	-0.2	-0.2
carbon source	L-Leucine (C)	+0.2	-0.6	-0.3	-0.9	-0.1
carbon source	4-Aminobutyric 10 mM (C)	+0.2	-0.3	-0.3	-0.9	-0.2
phage	P. putida Sci small MOI 0.1	-0.4	-0.2	+0.4	-1.2	-0.1
carbon source	Myristic (C)	-0.4	-0.6	+0.3	-0.5	-0.0
pH	Growth at pH6 and (C) D-Glucose	-0.3	-0.2	+0.2	-0.6	-0.4
carbon source	carbon source D-Glucose 55.5 mM	+0.2	-0.3	-0.3	-0.9	+0.2
stress	R2A with Fusaric 480 ug/mL	+0.2	-0.3	-0.9	-0.2	+0.1
carbon source	carbon source 4-vinylphenol 0.01 mM	+0.4	-0.0	-0.4	-1.0	+0.0
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.5	-0.2	-1.0	+0.2	+0.5
nitrogen source	nitrogen source nitrite 0.5mM	+0.3	-0.3	-0.8	-0.3	+0.2
carbon source	carbon source Bisabolene 48.9 mM	+0.3	-0.0	-0.5	-0.7	+0.1
temperature	Growth at 25C	-0.5	-0.2	-0.6	+0.3	+0.1
phage	P. putida Sci Big MOI 0.1	-0.5	-0.8	+0.5	+0.1	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.7	+0.4	-0.2	+0.2	-0.2
pH	pH 7	+0.3	+0.3	-0.5	-0.4	+0.1
pH	D-Glucose (C) pH 6	+0.3	-0.1	+0.1	+0.6	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.0	+0.5	-0.4	+0.8	-0.2
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	+1.0	-0.2	+0.4	-0.1
nitrogen source	Ammonium chloride and TNT (N)	-0.1	+0.5	+0.4	+0.4	+0.4
nitrogen source	TNT (N)	+0.2	+0.7	+0.1	+0.4	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	+0.3	-0.3	+1.3	+0.2