Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2572	PP_2573	PP_2574	PP_2575	PP_2577
nitrogen source	Urea (N)	+0.1	+0.2	-0.1	-4.5	-0.2
phage	P. putida PUT 7 MOI 1	-0.7	-0.7	-0.2	-2.2	+0.1
temperature shift	Temperature shift 30_to_21; with MOPS	+0.3	-0.2	-0.1	-2.8	-0.7
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.6	-0.5	-0.4	-0.2	-1.2
nitrogen source	2,6-diaminopimelic (N)	+0.4	+0.7	-0.5	-2.8	-0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-2.1	+0.3	+0.3	-1.0	-0.0
nitrogen source	Propiolactam (N)	-0.1	+0.1	-0.4	-2.0	-0.1
carbon source	Tween 20 (C)	-1.0	+0.1	+0.0	-1.6	+0.3
phage	P. putida Missley MOI 0.1	-1.1	-0.4	-1.3	+1.1	-0.3
nitrogen source	nitrogen source nitrite 0.5mM	-0.6	+0.4	+0.0	-1.8	+0.1
nitrogen source	NAG (N); with MOPS	-1.0	-0.9	+0.2	-0.4	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.6	-0.1	-0.1	-1.9	-0.4
phage	P. putida Sci Big MOI 0.1	-0.5	-0.9	-0.8	+0.0	+0.4
pH	Growth at pH7 and (C) Trisodium citrate	+0.7	-0.2	+0.5	-3.0	+0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.5	-0.2	+0.1	-1.3	+0.3
carbon source	carbon source 2-Deoxy-D-glucose 100 mM	+0.1	+0.4	-0.3	-1.8	+0.1
carbon source	L-Glutamic (C)	+0.1	+0.2	-0.2	-1.7	+0.3
carbon source	Valerolactone (C)	+0.3	+0.6	-0.7	-1.3	-0.1
phage	PUT8 MOI 0.1	+0.4	+0.4	-0.3	-1.6	-0.1
carbon source	carbon source 4-vinylphenol 0.1 mM	-0.2	+1.0	-0.2	-0.9	-0.7
pH	Valerolactone (C) pH 6.5	+0.3	+0.1	-0.0	-1.6	+0.5
carbon source	carbon source D-Glucose 55.5 mM	-0.5	+1.1	+0.1	-0.9	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.8	+0.4	-0.4	-1.5	+0.2
pH	pH 9	+0.0	+1.1	-0.1	-1.1	-0.1
pH	Growth at pH7 and (C) D-Glucose	-0.4	+0.7	-0.7	+0.7	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.6	-0.3	-0.5	+0.7	-0.4
carbon source	carbon source 3-O-methyl-glucose 10 mM	+0.6	+0.5	+0.2	-1.0	-0.2
pH	Growth at pH6 and (C) Trisodium citrate	-0.4	+0.7	+0.5	-0.8	+0.2
pH	pH 5	+0.5	+0.9	+0.1	-0.7	-0.3
phage	P. putida Sci small MOI 0.1	-0.2	+0.7	-0.4	+0.7	+0.9