Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_2541 and PP_5536 are separated by 233 nucleotidesPP_5536 and PP_2542 are separated by 250 nucleotidesPP_2542 and PP_2543 are separated by 324 nucleotidesPP_2543 and PP_2544 are separated by 3 nucleotides PP_2541: PP_2541 - Transcriptional factor-related protein, at 2,885,324 to 2,885,878 _2541 PP_5536: PP_5536 - conserved protein of unknown function with RHS repeat-associated core domain, at 2,886,112 to 2,886,993 _5536 PP_2542: PP_2542 - Transcriptional regulator, GntR family, at 2,887,244 to 2,888,668 _2542 PP_2543: PP_2543 - gamma-aminobutyrate permease, at 2,888,993 to 2,890,405 _2543 PP_2544: PP_2544 - conserved exported protein of unknown function, at 2,890,409 to 2,890,609 _2544
Group Condition PP_2541 PP_5536 PP_2542 PP_2543 PP_2544
carbon source 4-Aminobutyric 10 mM (C) -0.2 +0.0 -1.0 -1.5 N.D.
nitrogen source 5-Aminovaleric (N) +0.0 -0.0 -1.0 -1.2 N.D.
nitrogen source 5-Aminovaleric (N) -0.0 +0.1 -1.0 -1.2 N.D.
phage P. putida PUT 7 MOI 1 -1.2 -0.4 +0.3 -0.5 N.D.
pH Growth at pH6 and (C) D-Glucose -1.2 -0.0 +0.1 -0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.1 -0.3 -0.3 -0.4 N.D.
phage P. putida Sci Big MOI 0.1 -0.1 -0.7 -0.1 -0.3 N.D.
carbon source Tween 20 (C) -0.3 +0.1 -0.1 -0.8 N.D.
stress MOPS minimal media_Glucose20mM with Fluoroacetate 80 mM -0.2 -0.1 -0.9 +0.0 N.D.
nitrogen source 4-aminobutyric (N) +0.0 +0.0 -0.5 -0.6 N.D.
nitrogen source nitrogen source nitrite 0.5mM -0.5 +0.1 -0.6 +0.0 N.D.
phage P. putida Sci small MOI 0.1 -1.0 +0.1 +0.2 -0.3 N.D.
pH Growth at pH6 and (C) D-Glucose -0.4 -0.2 +0.1 -0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 -0.2 -0.2 -0.6 N.D.
nitrogen source D-2-Aminobutyric (N) -0.7 +0.2 -0.4 +0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 +0.3 -0.2 -0.2 N.D.
carbon source Valeric (C) -0.2 -0.2 -0.4 +0.3 N.D.
pH Growth at pH9 and (C) Trisodium citrate -0.7 +0.0 -0.1 +0.4 N.D.
pH pH 6 -0.3 +0.4 -0.2 -0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.2 -0.0 -0.7 +0.3 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.3 +0.2 -0.3 +0.3 N.D.
nitrogen source NAG (N); with MOPS -0.4 +0.2 +0.3 +0.2 N.D.
phage PUT8 MOI 10 -0.2 +0.7 -0.2 +0.1 N.D.
pH pH 7 -0.1 +0.5 -0.1 +0.5 N.D.
phage PUT8 MOI 10 -0.1 +0.7 -0.1 +0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 -0.0 -0.2 +0.2 N.D.
carbon source ferulate (C); with MOPS +0.0 +0.4 +0.3 +0.3 N.D.
nitrogen source NAG (N); with MOPS +0.1 +0.6 +0.2 +0.5 N.D.
nitrogen source Propandiamine (N) -0.1 -0.1 +0.5 +1.4 N.D.
nitrogen source Propandiamine (N) -0.0 +0.1 +1.0 +1.6 N.D.
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