Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

Or view all 989 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PP_2509	PP_2510	PP_2511	PP_2512	PP_5535
pH	Growth at pH7 and (C) D-Glucose	-0.8	-4.7	-0.9	-0.1	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.5	-4.9	-1.0	+0.0	-0.3
pH	Growth at pH7 and (C) Trisodium citrate	-0.7	-4.5	-0.2	+0.0	+0.3
pH	Growth at pH6 and (C) Trisodium citrate	-0.3	-4.4	-0.5	+0.1	+0.2
phage	PUT 8 MOI 1	-0.5	-4.8	+0.1	+0.3	+0.1
temperature shift	Temperature shift 30_to_21; with MOPS	-0.3	-2.8	-0.4	-0.3	-0.2
phage	P. putida PUT 7 MOI 1	+0.7	+0.1	-4.5	-0.1	+0.3
carbon source	Tween 20 (C)	-0.7	-0.7	-1.2	-0.4	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.4	-1.6	-0.7	-0.8	+0.1
pH	Valerolactone (C) pH 6.5	+0.2	-2.7	-0.3	+0.1	-0.4
carbon source	L-Leucine (C)	+0.3	-2.4	-0.5	-0.2	-0.4
carbon source	Valerolactone (C)	-0.4	+0.1	-1.9	-0.2	-0.7
carbon source	1,3-Butandiol (C)	+0.1	-2.1	-0.8	+0.0	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	-2.6	-0.6	+0.3	+0.2
carbon source	ferulate (C); with MOPS	+0.5	-3.3	+0.1	+0.1	-0.2
phage	P. putida Sci small MOI 0.1	-0.1	+1.3	-5.3	+0.7	+0.6
pH	pH 4	+0.2	-2.0	-0.3	-0.4	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.9	-2.9	+0.3	+0.3	+0.4
nitrogen source	NAG (N); with MOPS	-0.5	+0.3	-1.0	-0.5	-1.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.0	-3.5	+0.6	+0.2	+0.0
pH	Growth at pH8 and (C) D-Glucose	+0.0	-3.1	+0.3	-0.1	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.3	-1.0	-1.2	+0.4	-0.8
phage	P. putida South MOI 10	-1.1	-1.4	+0.7	-0.1	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-1.5	-0.7	+0.4	-0.2	+0.6
stress	Growth with Chloride 200 mM; with MOPS	+0.3	-1.8	-0.5	+0.5	+0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7	-0.7	+1.1	+0.1	-0.7
nitrogen source	D-2-Aminobutyric (N)	-0.6	-1.8	+1.6	-0.3	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.5	-1.4	+1.2	+0.0	-0.1
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+1.0	+1.1	-2.1	+0.2	-0.0
stress	R2A with Polymyxin B sulfate 0.001 mg/ml	+0.5	-0.6	+1.4	+0.6	+0.3