Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2495	PP_2496	PP_2497	PP_2498	PP_2499
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.3	+0.4	-1.4	-1.1	-3.1
carbon source	Tween 20 (C)	+0.1	-0.2	-0.5	-0.4	-3.6
carbon source	3-methyl-1-butanol 0.25 vol% (C)	-0.1	-0.7	-0.1	+0.7	-4.1
pH	Growth at pH8 and (C) Trisodium citrate	+0.1	-0.1	+0.4	-0.1	-4.3
carbon source	ferulate (C); with MOPS	-0.3	-0.9	-0.4	-0.0	-2.2
nitrogen source	D-2-Aminobutyric (N)	-0.2	-0.8	-1.0	+0.2	-1.8
nitrogen source	Ammonium chloride (N)	+0.0	+0.1	-3.5	-0.4	+0.1
carbon source	D-Glucuronic gamma lactone (C)	+0.1	-0.2	-0.1	-0.2	-3.0
stress	MOPS minimal media_Glucose20mM with Lithium chloride 200 mM	-0.1	-0.2	-0.1	-0.1	-2.9
nitrogen source	NAG (N); with MOPS	-0.1	+0.5	-0.2	+0.8	-4.3
phage	P. putida Sci small MOI 0.1	+0.1	+0.3	-0.7	-0.0	-2.8
carbon source	Valeric (C)	+0.1	+0.3	-0.6	-0.2	-2.5
stress	Growth with Chloride 500 mM; with MOPS	-0.2	+0.2	+0.1	-0.4	-2.5
pH	pH 9	-0.1	-0.9	-3.0	-0.3	+1.6
pH	Growth at pH9 and (C) Trisodium citrate	-0.3	+0.3	-0.5	+0.1	-2.2
carbon source	Rhamnogalacturonan - from potato (C)	-0.2	+0.2	+0.4	+0.1	-2.9
nitrogen source	Propandiamine (N)	+0.1	-0.2	+0.6	+0.0	-2.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.2	+0.3	-3.6	+0.5	+0.8
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.4	+0.5	-1.9	+0.4	-0.3
carbon source	carbon source D-Glucose 55.5 mM	-0.3	-1.4	+0.4	-1.0	+1.5
nitrogen source	D-2-Aminobutyric (N)	+0.0	+0.3	+1.1	-0.7	-1.4
carbon source	carbon source 3-O-methyl-glucose 50 mM	-0.1	-1.2	+0.5	-0.5	+1.5
carbon source	carbon source Bisabolene 48.9 mM	-0.2	-0.6	-0.3	-0.3	+2.0
carbon source	carbon source 3-O-methyl-glucose 10 mM	-0.1	-0.5	-0.5	-0.1	+2.2
carbon source	carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM	-0.1	-0.5	+0.4	-0.6	+1.7
pH	pH 5	-0.2	-0.4	+0.2	-0.5	+2.0
carbon source	carbon source 4-vinylphenol 0.1 mM	-0.2	-0.3	+0.1	-0.4	+2.2
pH	pH 8	-0.2	-0.3	+1.0	-0.3	+1.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+2.0	-0.0	+0.7	-0.7
phage	P. putida Sci Big MOI 0.1	-0.0	-0.6	+1.4	+0.8	+1.1