Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2476	PP_5528	PP_2477	PP_2478	PP_2479
micoeukaryotes	Tetrahymena sp., Mixed culture-2	-0.3	-3.3	-0.3	-0.0	-0.2
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.1	-4.1	-0.1	+0.0	+0.2
nitrogen source	D-2-Aminobutyric (N)	+0.2	-3.2	-0.1	-0.3	+0.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.0	-2.8	+0.0	-0.0	-0.4
carbon source	carbon source 2-Deoxy-D-glucose 100 mM	-0.0	-2.2	-0.6	-0.1	-0.1
carbon source	Myristic (C)	-0.0	-2.3	-0.1	-0.2	-0.4
carbon source	4-Methyl-2-oxopentanoic (C)	-0.1	-2.8	+0.2	-0.1	-0.2
phage	P. putida Sci Big MOI 0.1	+0.6	-2.8	+0.0	-0.1	-0.5
carbon source	D-Glucose (C)	+0.1	-2.6	-0.0	-0.0	+0.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.1	-1.7	-0.4	-0.3	-0.1
carbon source	3-Methyl-2-Oxobutanoic Acid (C)	-0.1	-1.9	-0.2	-0.1	-0.0
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	-1.8	-0.6	+0.2	+0.0
temperature	Growth at 25C	+0.1	-1.9	-0.4	-0.0	+0.0
r2a control with 0.2x vogels	R2A control with 0.2X Vogels	+0.1	-2.6	+0.3	-0.2	+0.3
phage	P. putida PUT 7 MOI 1	-0.0	-2.7	+0.5	-0.1	+0.3
pH	Growth at pH6 and (C) Trisodium citrate	+0.4	-1.7	-0.6	-0.2	+0.1
nitrogen source	2,6-diaminopimelic (N)	+0.3	-2.6	-0.1	+0.2	+0.3
nitrogen source	Putrescine (N)	-0.0	-2.0	+0.2	-0.0	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.0	-2.1	+0.4	-0.1	+0.1
nitrogen source	2,6-diaminopimelic (N)	+0.3	-2.3	+0.3	+0.1	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.2	-2.0	+0.4	-0.2	+0.3
carbon source	ferulate (C); with MOPS	-0.3	+1.2	-1.1	-0.1	-0.2
pH	Growth at pH6 and (C) D-Glucose	-0.1	+1.4	-0.8	-0.1	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-0.1	+1.4	-0.2	+0.3	+0.4
phage	PUT 8 MOI 1	+0.5	+1.1	+0.4	-0.0	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	+2.2	+0.2	+0.1	+0.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.1	+2.3	+0.1	-0.0	+0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.1	+2.3	+0.4	-0.1	+0.3
carbon source	Valerolactone (C)	+0.3	+3.1	-0.4	-0.1	+0.1
carbon source	Valerolactone (C)	+0.0	+3.6	+0.0	-0.1	-0.1