Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2474	PP_2475	PP_2476	PP_5528	PP_2477
micoeukaryotes	Tetrahymena sp., Mixed culture-2	-1.4	-0.5	-0.3	-3.3	-0.3
temperature	Growth at 25C	-1.8	-1.5	+0.1	-1.9	-0.4
carbon source	3-methyl-1-butanol (C)	-1.0	-4.3	+0.0	+0.1	+0.0
nitrogen source	NAG (N); with MOPS	-2.3	-1.2	-0.2	-0.8	-0.6
carbon source	3-methyl-1-butanol (C)	-0.3	-4.5	+0.1	-0.1	-0.0
carbon source	4-Methyl-2-oxopentanoic (C)	-0.3	-1.5	-0.1	-2.8	+0.2
nitrogen source	Ammonium chloride and TNT (N)	-0.2	-3.7	+0.0	-0.2	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-2.1	-0.6	+0.2	-2.0	+0.4
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.5	-0.4	+0.1	-4.1	-0.1
nitrogen source	D-2-Aminobutyric (N)	-0.4	-0.4	+0.2	-3.2	-0.1
nitrogen source	Ammonium chloride and TNT (N)	+0.4	-3.6	+0.0	-0.4	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.1	-0.8	-0.0	-2.8	+0.0
carbon source	acetate (C)	-3.0	-1.1	-0.1	+1.0	-0.5
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	-1.1	-0.2	-1.8	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.7	-2.8	-0.1	+0.4	-0.2
nitrogen source	Ammonium chloride and TNT (N)	+0.5	-2.6	+0.0	-0.1	-0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-3.3	-0.1	-0.2	+0.5	+0.3
micoeukaryotes	Tetrahymena sp., Mixed culture-1	+0.7	-2.2	+0.1	-1.0	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	-1.2	+0.0	-2.1	+0.4
carbon source	3-methyl-1-butanol 0.1 vol% (C)	+0.5	-4.3	+0.3	+0.7	+0.4
carbon source	D-Glucose (C); with MOPS	+0.6	-1.2	-0.0	-1.8	+0.3
phage	P. putida PUT 7 MOI 1	+0.6	-0.4	-0.0	-2.7	+0.5
nitrogen source	2,6-diaminopimelic (N)	+0.3	+0.5	+0.3	-2.6	-0.1
phage	P. putida Sci Big MOI 0.1	-0.4	+1.0	+0.6	-2.8	+0.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	+0.1	-1.9	-0.0	+1.2	-0.5
carbon source	carbon source 2-Deoxy-D-glucose 100 mM	+0.4	+1.4	-0.0	-2.2	-0.6
pH	Growth at pH9 and (C) Trisodium citrate	+1.3	-0.9	-0.0	+1.0	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.5	-1.0	+0.1	+2.3	+0.4
carbon source	Valerolactone (C)	+0.1	-0.1	+0.3	+3.1	-0.4
carbon source	Valerolactone (C)	-0.3	-0.0	+0.0	+3.6	+0.0