Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2439	PP_2440	PP_2441	PP_2442	PP_2443
nitrogen source	Ammonium chloride (N)	-0.3	+0.1	-0.6	-5.0	+0.3
phage	PUT 8 MOI 1	+0.2	+0.4	-0.4	-5.2	-0.5
carbon source	DL-3-Hydroxybutyric (C)	-1.1	-0.2	-0.6	-3.1	-0.2
pH	pH 8	-0.5	-0.6	-0.9	-2.3	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.2	-0.5	+0.1	-4.0	-0.1
stress	MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL	-1.4	-0.2	-0.8	-1.7	-0.0
stress	MOPS minimal media_Glucose20mM with Chloride 200 mM	-1.3	-0.5	-0.5	-1.7	+0.1
stress	MOPS minimal media_Glucose20mM with Poly(3-hydroxybutyric) 0.1 mg/mL	-1.4	-0.1	-0.8	-1.4	-0.1
pH	D-Glucose (C) pH 7	-1.3	-0.2	-0.0	-2.2	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	-0.4	-0.8	-2.3	-0.2
pH	D-Glucose (C) pH 6.5	-1.9	-0.2	-0.2	-1.3	-0.1
carbon source	carbon source D-Glucose 55.5 mM	-0.5	-0.2	-1.9	-0.6	-0.4
pH	D-Glucose (C) pH 7.5	-1.6	-0.3	-0.6	-1.3	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.7	-0.9	+0.1	-1.7	-0.4
pH	Growth at pH6 and (C) D-Glucose	-0.8	-0.1	-1.8	-1.2	+0.3
stress	MOPS minimal media_Glucose20mM with Fluoroacetate 80 mM	-1.6	-0.3	-0.4	-1.1	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-3.9	-0.2	-0.1	+1.3	-0.3
nitrogen source	2,6-diaminopimelic (N)	-0.0	-0.0	-4.1	+0.5	+0.4
stress	MOPS minimal media_Glucose20mM with PHB-HV-HH 0.1 mg/mL	-1.8	-0.1	+0.1	-1.5	+0.1
stress	MOPS minimal media_Glucose20mM with Lithium chloride 200 mM	-1.3	-0.1	+0.0	-1.9	+0.2
carbon source	DL-3-Hydroxyisobutyric (C)	-1.9	+0.0	+0.5	-1.7	+0.1
nitrogen source	D-2-Aminobutyric (N)	-1.4	+0.1	-1.2	-0.9	+0.4
no stress control	Growth with no stress	+0.1	+0.2	+0.1	-3.3	+0.1
carbon source	3-methyl-1-butanol 0.1 vol% (C)	-2.5	+0.4	-0.5	+0.5	-0.1
micoeukaryotes	Tetrahymena sp., Mixed culture-2	-0.6	-0.3	+0.9	-2.1	-0.0
attachment on pdms	attachment on PDMS; 2 hours	+0.2	-0.2	+0.5	-2.6	-0.2
nitrogen source	NAG (N); with MOPS	+0.2	+0.5	-0.5	-2.8	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-1.6	+0.3	-0.6	+0.8	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-1.9	-0.5	+0.8	+0.6	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	+0.3	+2.8	-0.0	+0.4