Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2428	PP_2429	PP_2430	PP_2431	PP_2432
microaerobic m9	microaerobic M9	-0.1	-2.2	-0.5	-0.0	-0.4
pH	Growth at pH6 and (C) Trisodium citrate	+0.1	-2.6	+0.3	+0.2	-1.1
carbon source	Myristic (C)	+0.0	-1.5	-0.2	-0.5	-0.8
phage	P. putida Sci Big MOI 0.1	-0.3	-1.8	-0.1	+0.0	-0.7
pH	Growth at pH6 and (C) D-Glucose	+0.1	-2.2	-0.5	-0.1	-0.2
carbon source	acetate (C)	-0.1	-2.2	+0.2	-0.1	-0.1
carbon source	D-Fructose (C)	+0.1	-1.3	-0.4	-0.0	-0.6
carbon source	carbon source 3-O-methyl-glucose 50 mM	-0.5	-1.0	-1.3	+0.3	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	-1.2	-0.8	+0.2	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.2	-1.9	+0.2	+0.1	-0.1
nitrogen source	Ammonium chloride (N)	+0.1	-2.3	+0.4	-0.1	+0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.0	-2.3	+0.4	+0.0	+0.1
carbon source	Lauric (C)	+0.2	-1.8	+0.3	-0.2	-0.2
carbon source	carbon source 4-vinylphenol 0.01 mM	-0.0	-1.8	+0.5	-0.2	+0.2
carbon source	ferulate (C); with MOPS	-0.2	-1.5	-0.5	+0.4	+0.4
nitrogen source	NAG (N); with MOPS	-0.2	+0.4	-1.9	+0.2	+0.1
nitrogen source	Ammonium chloride and TNT (N)	+0.3	-2.1	+0.1	-0.2	+0.5
pH	Growth at pH8 and (C) D-Glucose	+0.2	-1.0	+0.3	+0.1	-0.8
carbon source	D-Glucose (C) with 20AA_mix_minus_Cys	+0.0	-1.3	-0.3	+0.3	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.2	-0.8	+1.0	-0.5	-0.3
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.0	+1.0	-0.3	-0.7	+0.4
phage	P. putida PUT 7 MOI 1	-0.2	+1.4	-0.8	+0.0	+0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.0	+1.9	-0.3	-0.0	+0.7
nitrogen source	L-Leucine (N)	-0.1	+0.7	+1.6	+0.1	-0.1
carbon source	carbon source 2-Deoxy-D-glucose 100 mM	-0.1	+1.5	+0.1	+0.2	+0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.0	+3.3	+0.1	-0.4	+0.2
nitrogen source	L-Leucine (N)	-0.3	+1.4	+3.3	+0.1	-0.3
carbon source	L-Leucine (C)	-0.0	+2.2	+3.0	+0.2	-0.3
carbon source	L-Leucine (C)	-0.2	+2.3	+3.4	+0.3	-0.3
carbon source	L-Leucine (C)	+0.0	+2.7	+3.0	+0.1	-0.3