Fitness for 5 genes in Pseudomonas putida KT2440

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 989 experiments or choose conditions or try the comparative fitness browser

500 ntPP_2414 and PP_2415 are separated by 1 nucleotidesPP_2415 and PP_2416 are separated by 56 nucleotidesPP_2416 and PP_2417 overlap by 4 nucleotidesPP_2417 and PP_2418 overlap by 4 nucleotides PP_2414: PP_2414 - conserved exported protein of unknown function, at 2,760,939 to 2,761,418 _2414 PP_2415: PP_2415 - putative acetyltransferase, GNAT family, at 2,761,420 to 2,762,049 _2415 PP_2416: PP_2416 - putative Iron ABC transporter, ATP-binding protein, at 2,762,106 to 2,762,894 _2416 PP_2417: PP_2417 - putative Iron ABC transporter, permease protein, at 2,762,891 to 2,763,910 _2417 PP_2418: PP_2418 - putative cobalamin ABC transporter, periplasmic, at 2,763,907 to 2,765,001 _2418
Group Condition PP_2414 PP_2415 PP_2416 PP_2417 PP_2418
phage P. putida Sci small MOI 0.1 -4.5 +0.2 -5.7 -2.2 -0.6
carbon source butyrate (C) -5.9 -0.1 -1.2 +0.1 +0.1
r2a control with 0.2x vogels R2A control with 0.2X Vogels -5.1 +0.2 +0.2 -0.7 -0.3
carbon source D-Glucose (C) -3.7 -0.0 -1.2 -0.5 -0.1
carbon source Beta-alanine (C) -4.9 -0.1 -0.2 +0.2 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -4.3 -0.4 -0.8 +0.5 +0.2
temperature shift Temperature shift 30_to_21 -4.7 -0.2 -0.3 +0.3 +0.1
stress MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL -5.1 -0.3 +0.3 +0.4 +0.1
carbon source ferulate (C); with MOPS -0.3 -0.3 -4.5 +0.3 +0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -4.7 -0.3 +1.5 -1.2 +0.3
carbon source Trisodium citrate (C) -2.8 -0.2 +0.5 -1.4 -0.5
nitrogen source 2,6-diaminopimelic (N) -0.9 -0.1 -2.6 -0.3 -0.4
stress MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL -3.8 -0.6 -0.3 +0.4 +0.1
temperature shift Temperature shift 30_to_25; with MOPS -2.6 +0.2 -1.2 -0.4 -0.2
carbon source Ferulic Acid (C) -2.8 +0.1 -0.7 -0.6 -0.0
carbon source L-Leucine (C) -2.7 +0.2 -1.4 +0.0 -0.0
nitrogen source Urea (N) -2.7 +0.2 -0.6 -0.3 -0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days +0.4 -0.6 -2.8 -0.6 -0.2
carbon source 4-Hydroxybenzoic Acid (C) -3.6 -0.3 -0.3 +0.3 +0.1
carbon source L-Lysine (C) -3.9 -0.1 -0.1 +0.1 +0.2
nitrogen source Propiolactam (N) -3.1 -0.8 +0.2 +0.3 -0.2
carbon source Crotonic (C) -3.9 +0.0 +0.2 +0.3 -0.1
stress R2A with Fusaric 480 ug/mL -3.8 +0.1 +0.6 -0.0 -0.2
carbon source carbon source 4-vinylphenol 0.1 mM -3.6 -0.4 +0.8 +0.6 -0.2
pH pH 6 -1.6 +0.2 -2.0 +0.8 -0.0
nitrogen source nitrogen source nitrite 1mM -3.0 -0.3 +1.0 +0.3 -0.0
nitrogen source D-2-Aminobutyric (N) -3.1 -0.0 -0.2 +1.5 +0.1
pH pH 9 -2.9 +0.0 +1.6 +0.2 +0.0
pH pH 4 -2.2 -0.2 +1.2 +0.8 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +2.5 +0.6 -1.4 +0.1 -0.4
remove
PP_2414
plot		 remove
PP_2415
plot		 remove
PP_2416		 remove
PP_2417
plot		 remove
PP_2418
plot