Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2404	PP_2405	PP_2406	PP_2407	PP_2408
carbon source	Quinic Acid (C)	-0.2	-0.2	-2.0	N.D.	-0.1
carbon source	Quinic Acid (C)	-0.2	+0.0	-2.1	N.D.	-0.2
carbon source	Myristic (C)	-1.3	+0.1	-0.6	N.D.	-0.4
carbon source	carbon source D-Glucose 55.5 mM	-0.1	-0.2	-0.8	N.D.	-1.1
nitrogen source	Urea (N)	-1.5	-0.1	-0.3	N.D.	-0.1
phage	P. putida Sci small MOI 0.1	-1.2	-0.9	-0.1	N.D.	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.7	+0.1	-0.9	N.D.	-0.4
nitrogen source	D-2-Aminobutyric (N)	-1.1	-0.4	+0.4	N.D.	-0.8
pH	Growth at pH8 and (C) D-Glucose	-1.3	-0.0	-0.2	N.D.	-0.2
pH	Growth at pH6 and (C) D-Glucose	-1.2	-0.4	-0.6	N.D.	+0.4
phage	P. putida PUT 7 MOI 1	-0.1	+0.0	-1.3	N.D.	-0.2
nitrogen source	no extra (N); with MOPS	-1.1	-0.1	+0.3	N.D.	-0.6
nitrogen source	Propiolactam (N)	-0.9	-0.6	+0.1	N.D.	-0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7	+0.4	-0.5	N.D.	-0.2
phage	P. putida Sci small MOI 0.1	-0.5	-0.1	-0.7	N.D.	+0.4
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.7	+0.2	+0.4	N.D.	-0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.9	-0.2	+0.4	N.D.	-0.1
carbon source	ferulate (C); with MOPS	+0.6	-0.4	-1.3	N.D.	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.5	-0.5	-0.3	N.D.	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-0.5	-0.3	-0.3	N.D.	+0.5
nitrogen source	nitrogen source nitrite 0.5mM	+0.8	-0.3	-0.4	N.D.	-0.7
pH	pH 7	+1.0	-0.3	-0.1	N.D.	-1.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.7	-0.3	-0.5	N.D.	-0.6
nitrogen source	nitrogen source nitrite 1mM	+0.9	-0.1	+0.2	N.D.	-0.6
nitrogen source	nitrogen source nitrate 20mM	+0.6	+0.3	+0.4	N.D.	-0.4
temperature shift	Temperature shift 30_to_25; with MOPS	+0.8	-0.4	+0.3	N.D.	+0.3
stress	R2A with Fusaric 480 ug/mL	+0.9	+0.5	-0.4	N.D.	-0.0
carbon source	Tween 20 (C)	+0.5	+0.4	-0.3	N.D.	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7	-0.2	+1.4	N.D.	-0.1
carbon source	L-Leucine (C)	+0.0	+0.6	+0.7	N.D.	+0.7