Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2400	PP_2401	PP_2402	PP_2403	PP_2404
pH	Growth at pH6 and (C) D-Glucose	-0.5	+0.0	-1.4	-4.3	-1.2
temperature	Growth at 30C; with MOPS	+0.2	-0.1	-2.6	-4.3	-0.2
nitrogen source	Urea (N); with MOPS	+0.1	+0.3	-3.2	-4.2	+0.5
carbon source	ferulate (C); with MOPS	-0.2	+0.2	-3.3	-2.9	+0.1
nitrogen source	Urea (N)	-0.1	-0.2	-4.0	-0.3	-1.5
carbon source	Delta-Undecalactone (C)	+0.1	+0.2	-3.3	-2.8	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.1	-0.6	-4.5	-0.4	-0.3
nitrogen source	NAG (N)	+0.0	-0.5	-4.1	-1.3	+0.1
pH	Growth at pH9 and (C) Trisodium citrate	+0.1	+0.1	-4.1	-1.8	-0.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.0	+0.1	-2.0	-3.7	-0.1
pH	Growth at pH8 and (C) D-Glucose	-0.4	+0.3	-4.0	-0.0	-1.3
temperature shift	Temperature shift 30_to_21; with MOPS	+0.1	+0.1	-3.7	-1.1	-0.5
stress	Growth with Chloride 200 mM; with MOPS	-0.1	+0.7	-1.4	-4.3	+0.1
nitrogen source	nitrogen source nitrite 0.5mM	+0.4	-0.5	-0.9	-4.8	+0.8
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.0	-0.3	-5.1	-0.0	+0.5
stress	R2A with Fusaric 480 ug/mL	-0.1	-0.0	-5.2	-0.1	+0.6
carbon source	ferulate (C); with MOPS	-0.6	+0.7	-1.6	-3.1	-0.1
stress	Growth with Chloride 500 mM; with MOPS	+0.1	+0.5	-3.1	-2.0	-0.0
stress	Growth with Chloride 200 mM	+0.3	-0.1	-4.0	-1.0	+0.6
phage	PUT8 MOI 10	-0.1	+0.1	-4.5	+0.6	-0.3
temperature shift	Temperature shift 30_to_25; with MOPS	-0.3	+0.5	-3.6	-1.6	+0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.0	-0.1	-3.9	+0.8	-0.7
nitrogen source	nitrite (N)	+0.7	-0.0	-2.4	-2.3	+0.3
pH	Growth at pH7 and (C) Trisodium citrate	-0.1	+0.2	-3.7	+1.2	-0.8
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	+0.2	+0.3	-5.2	+0.7	+0.7
micoeukaryotes	Tetrahymena sp., Mixed culture-2	-0.3	-0.1	-4.4	+1.3	+0.3
nitrogen source	NAG (N); with MOPS	-0.3	+0.3	-3.9	+1.0	-0.1
nitrogen source	NAG (N); with MOPS	+0.4	-0.1	-3.7	+1.1	+0.3
phage	P. putida Sci small MOI 0.1	-2.1	-0.8	+0.8	+1.6	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.1	+0.5	-3.5	+1.7	+1.1