Fitness for 5 genes in Pseudomonas putida KT2440

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 989 experiments or choose conditions or try the comparative fitness browser

500 ntPP_2376 and PP_2377 are separated by 194 nucleotidesPP_2377 and PP_2378 are separated by 58 nucleotidesPP_2378 and PP_2379 are separated by 196 nucleotidesPP_2379 and PP_2380 are separated by 0 nucleotides PP_2376: PP_2376 - Esterified fatty acid cis/trans isomerase, at 2,715,286 to 2,717,586 _2376 PP_2377: PP_2377 - putative acetyltransferase Act, at 2,717,781 to 2,718,815 _2377 PP_2378: PP_2378 - Fe/S biogenesis protein NfuA, at 2,718,874 to 2,719,458 _2378 PP_2379: PP_2379 - putative cytochrome oxidase biogenesis protein, at 2,719,655 to 2,720,263 _2379 PP_2380: PP_2380 - conserved exported protein of unknown function, at 2,720,264 to 2,720,746 _2380
Group Condition PP_2376 PP_2377 PP_2378 PP_2379 PP_2380
stress R2A with Fusaric 240 ug/mL -0.0 -0.0 -2.2 -4.0 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.2 -0.1 -4.0 -1.4 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.1 -0.2 -3.0 -1.5 N.D.
mixed community Putida_ML5X with Paraburkholderia sabiae T6SS mutant +0.2 +0.0 -2.9 -1.9 N.D.
phagefrs Time6-FRS +0.1 +0.1 -2.8 -1.9 N.D.
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 +0.0 -1.8 -2.6 N.D.
phagefrs Time6-FRS +0.1 +0.0 -2.3 -2.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.1 -0.2 -2.1 -2.0 N.D.
stress R2A with Fusaric 480 ug/mL -0.0 +0.0 -1.3 -3.0 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.1 +0.1 -3.3 -0.9 N.D.
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 -0.1 -1.7 -2.2 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 -0.0 -2.1 -2.3 N.D.
phagefrs Time6-FRS +0.1 +0.1 -2.1 -2.0 N.D.
phage PUT8 MOI 10 -0.6 +0.1 -3.4 +0.2 N.D.
toxin pUC18_phdP1_pSU18T_docP1 +0.1 +0.2 -2.5 -1.4 N.D.
pH Growth at pH6 and (C) D-Glucose +0.1 -0.2 -3.8 +0.3 N.D.
temperature Growth at 25C +0.1 -0.0 -3.9 +0.3 N.D.
temperature shift Temperature shift 10_to_25; with MOPS +0.4 -0.1 -3.5 -0.3 N.D.
temperature Growth at 30C; with MOPS +0.3 -0.1 -4.0 +0.4 N.D.
pH Growth at pH6 and (C) D-Glucose -0.1 -0.1 -3.7 +0.4 N.D.
temperature Growth at 30C +0.1 -0.0 -3.9 +0.4 N.D.
r2a control with 0.2x vogels R2A control with 0.2X Vogels +0.2 -0.0 -3.9 +0.4 N.D.
stress Growth with Chloride 200 mM +0.0 +0.0 -3.7 +0.5 N.D.
temperature Growth at 30C; with MOPS +0.0 -0.0 -3.7 +0.5 N.D.
pH Growth at pH6 and (C) Trisodium citrate -0.0 -0.1 -3.6 +0.7 N.D.
carbon source D-Glucose (C) +0.5 -0.1 -3.5 +0.3 N.D.
pH Growth at pH6 and (C) D-Glucose -0.1 -0.4 -3.5 +1.3 N.D.
micoeukaryotes C.elegans, mixed culture-1 -0.4 +0.1 -3.3 +0.7 N.D.
nitrogen source NAG (N); with MOPS +0.1 +0.2 -3.4 +0.9 N.D.
nitrogen source Propandiamine (N) -0.2 -0.1 -1.4 +2.9 N.D.
remove
PP_2376
plot		 remove
PP_2377
plot		 remove
PP_2378		 remove
PP_2379
plot		 remove
PP_2380
plot