Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2307	PP_2308	PP_2309	PP_2310	PP_2311
nitrogen source	nitrate (N)	-2.2	-0.0	-5.7	+0.0	+0.2
nitrogen source	NAG (N); with MOPS	-0.8	+0.2	-5.7	-0.6	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-3.8	-0.1	-3.9	+0.2	+0.1
carbon source	Trisodium citrate (C)	-1.1	+0.1	-5.7	-0.6	+0.3
nitrogen source	NAG (N); with MOPS	-6.9	+0.2	-0.6	+0.0	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-4.1	-0.5	-2.0	+0.2	+0.2
temperature shift	Temperature shift 30_to_25	-6.8	+0.2	+0.5	+0.1	+0.4
temperature	Growth at 30C; with MOPS	-0.2	-0.2	-5.7	+0.1	+0.5
carbon source	Valerolactone (C)	-4.0	+0.2	-1.0	+0.1	-0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.5	+0.0	-2.8	-0.3	+0.1
phage	P. putida Sci small MOI 0.1	+1.3	+0.3	-4.9	-0.5	-0.2
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.2	-0.9	-1.2	-0.9	-0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.9	+0.1	-2.2	-0.0	-0.8
carbon source	Crotonic (C)	-1.8	-0.3	-1.4	-0.3	+0.1
carbon source	Glutaric (C)	-2.4	-0.1	-1.1	+0.1	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-3.8	+0.4	-0.6	+0.1	+0.3
pH	Growth at pH6 and (C) D-Glucose	-2.0	+0.2	-1.8	-0.1	+0.4
nitrogen source	Caprolactam (N)	-2.8	+0.2	-0.5	+0.2	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-2.0	+0.1	+0.5	-0.4	-1.2
phage	P. put South MOI 10	+0.2	+0.2	-1.6	-0.9	-0.9
nitrogen source	nitrogen source nitrite 0.5mM	-0.6	-0.1	+0.5	-0.2	-2.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.9	-0.2	-2.0	+0.9	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.2	+0.3	-3.2	+0.2	-0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7	+0.1	-1.7	+0.8	-0.8
phage	P. put South MOI 1	+0.6	+0.2	-3.1	+0.2	-0.1
carbon source	D-Glucose (C)	-0.6	+0.5	-2.5	+0.1	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-2.6	+0.2	+0.6	+0.3	+0.2
temperature shift	Temperature shift 10_to_25; with MOPS	-0.9	+0.4	-1.5	+0.5	+0.4
pH	Growth at pH9 and (C) Trisodium citrate	-1.5	+0.3	-0.7	+0.4	+0.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.9	+0.2	+1.4	+0.2	-1.3