Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_2298 and PP_2299 are separated by 230 nucleotidesPP_2299 and PP_2300 are separated by 91 nucleotidesPP_2300 and PP_2301 are separated by 63 nucleotidesPP_2301 and PP_2302 are separated by 163 nucleotides PP_2298: PP_2298 - conserved protein of unknown function, at 2,626,347 to 2,626,685 _2298 PP_2299: PP_2299 - Trigger factor, at 2,626,916 to 2,628,247 _2299 PP_2300: PP_2300 - ATP-dependent Clp protease proteolytic subunit, at 2,628,339 to 2,628,980 _2300 PP_2301: PP_2301 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 2,629,044 to 2,630,372 _2301 PP_2302: PP_2302 - DNA-binding, ATP-dependent protease, at 2,630,536 to 2,632,932 _2302
Group Condition PP_2298 PP_2299 PP_2300 PP_2301 PP_2302
carbon source 3-methyl-1-butanol (C) N.D. -2.0 N.D. N.D. -4.1
nitrogen source NAG (N); with MOPS N.D. -3.4 N.D. N.D. -1.7
stress R2A with Fusaric 480 ug/mL N.D. -2.2 N.D. N.D. -2.8
stress R2A with Fusaric 480 ug/mL N.D. -2.0 N.D. N.D. -2.8
carbon source 3-methyl-1-butanol (C) N.D. -0.6 N.D. N.D. -3.6
carbon source butyrate (C) N.D. -1.7 N.D. N.D. -2.6
carbon source Delta-Undecalactone (C) N.D. -1.1 N.D. N.D. -3.1
carbon source 1,5-Pentanediol (C) N.D. -1.7 N.D. N.D. -2.5
carbon source Tween 20 (C) N.D. -2.5 N.D. N.D. -1.6
phage P. putida Sci small MOI 0.1 N.D. -3.4 N.D. N.D. -0.7
carbon source 3-methyl-1-butanol 0.1 vol% (C) N.D. -1.4 N.D. N.D. -2.7
phage P. putida South MOI 10 N.D. -4.6 N.D. N.D. +0.6
carbon source Levulinic Acid (C) N.D. -0.8 N.D. N.D. -3.2
carbon source L-Leucine (C) N.D. -2.2 N.D. N.D. -1.8
stress R2A with Fusaric 480 ug/mL N.D. -2.7 N.D. N.D. -1.2
carbon source 4-Methyl-2-oxopentanoic (C) N.D. -0.4 N.D. N.D. -3.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs N.D. -0.5 N.D. N.D. -3.2
stress Growth with Chloride 500 mM N.D. -0.7 N.D. N.D. -3.0
stress R2A with Fusaric 480 ug/mL N.D. -1.8 N.D. N.D. -1.8
stress R2A with Fusaric 480 ug/mL N.D. -2.1 N.D. N.D. -1.5
nitrogen source NAG (N); with MOPS N.D. +0.6 N.D. N.D. -3.2
phage P. put PUT 10 MOI 0.1 N.D. -2.8 N.D. N.D. +0.8
phage P. put PUT 10 MOI 10 N.D. -3.3 N.D. N.D. +1.6
phage P. putida PUT10 MOI 1 N.D. -2.9 N.D. N.D. +1.4
phage P. putida South MOI 0.1 N.D. -3.4 N.D. N.D. +2.1
phage P. put South MOI 0.1 N.D. -2.5 N.D. N.D. +1.3
phage P. putida PUT10 MOI 10 N.D. -2.8 N.D. N.D. +2.0
nitrogen source Propandiamine (N) N.D. +2.1 N.D. N.D. -2.3
phage P. putida South MOI 1 N.D. -2.0 N.D. N.D. +1.9
stress Formaldehyde 0.03125 vol% N.D. +0.5 N.D. N.D. +3.1
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