Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2290	PP_2291	PP_2292	PP_2293	PP_2294
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	-2.1	+0.1	-0.2	-0.2
nitrogen source	nitrate (N)	-0.4	-1.9	-0.0	-0.1	+0.3
stress	R2A with Fusaric 480 ug/mL	-1.0	-1.0	+0.1	+0.1	+0.1
carbon source	Myristic (C)	-0.9	-1.7	+0.6	+0.3	+0.2
pH	Growth at pH6 and (C) Trisodium citrate	+0.5	-2.0	+0.0	-0.0	+0.0
pH	pH 5	+0.4	-0.6	-0.9	+0.3	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-1.3	+0.5	-0.1	-0.2	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.6	-0.6	-0.5	-0.4	-0.1
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-1.5	+0.3	+0.0	-0.0	+0.4
carbon source	3-methyl-1-butanol 0.1 vol% (C)	-0.8	-0.7	+0.4	+0.2	+0.3
nitrogen source	2,6-diaminopimelic (N)	+0.4	-1.1	+0.3	+0.4	-0.4
carbon source	ferulate (C); with MOPS	+1.0	-1.2	-0.0	+0.1	-0.2
carbon source	Tween 20 (C)	+0.6	-0.5	-0.3	-0.4	+0.4
phage	P. putida South MOI 10	+0.3	-1.1	-0.1	+0.5	+0.4
phage	PUT8 MOI 0.1	-0.6	-0.4	+0.7	+0.1	+0.3
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.6	+1.1	-0.2	+0.2	-0.1
pH	Growth at pH6 and (C) D-Glucose	-0.9	+0.9	-0.0	+0.3	+0.4
phage	PUT 8 MOI 1	+0.7	-0.2	+0.9	-0.4	-0.2
stress	Growth with Chloride 200 mM; with MOPS	+0.5	+0.9	-0.7	+0.1	+0.2
carbon source	Valerolactone (C)	+0.9	-0.6	+0.4	+0.4	+0.1
temperature shift	Temperature shift 30_to_21; with MOPS	+0.6	+0.9	-0.2	+0.3	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	+1.1	+0.5	-0.4	-0.3
stress	Growth with Chloride 200 mM	+0.7	+0.9	-0.4	+0.2	+0.0
pH	Growth at pH9 and (C) Trisodium citrate	+0.1	+1.5	+0.5	+0.2	-0.6
phage	P. putida Sci small MOI 0.1	-0.3	+0.6	+0.5	+0.8	+0.3
phage	P. putida Missley MOI 0.1	+0.3	+0.9	-0.4	+0.6	+0.6
phage	PUT8 MOI 10	+0.3	+0.8	+0.7	+0.2	+0.3
pH	Growth at pH9 and (C) D-Glucose	+1.0	+1.0	+0.0	+0.3	+0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.9	+1.9	+0.6	+0.1	-0.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+2.4	+0.7	+0.7	-0.3	+0.1