Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_2278 and PP_5512 overlap by 1 nucleotidesPP_5512 and PP_2279 are separated by 9 nucleotidesPP_2279 and PP_2280 overlap by 23 nucleotidesPP_2280 and PP_2281 overlap by 1 nucleotides PP_2278: PP_2278 - conserved protein of unknown function, at 2,600,102 to 2,600,296 _2278 PP_5512: PP_5512 - protein of unknown function, at 2,600,296 to 2,600,514 _5512 PP_2279: PP_2279 - Head-to-tail joining protein, at 2,600,524 to 2,602,098 _2279 PP_2280: PP_2280 - conserved protein of unknown function, at 2,602,076 to 2,602,237 _2280 PP_2281: PP_2281 - putative Capsid assembly protein, at 2,602,237 to 2,603,016 _2281
Group Condition PP_2278 PP_5512 PP_2279 PP_2280 PP_2281
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs N.D. +0.0 -0.1 -3.1 -1.1
stress NaCl stress 250 mM N.D. +0.2 -0.0 -3.2 +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days N.D. +0.0 +0.2 -2.5 -0.5
carbon source acetate (C) N.D. +0.2 +0.0 -3.1 +0.0
micoeukaryotes Tetrahymena sp., Mixed culture-2 N.D. -0.5 +0.0 -2.5 +0.2
carbon source Tween 20 (C) N.D. +0.6 -0.2 -2.9 +0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs N.D. -0.1 -0.2 -1.8 -0.3
carbon source 5-Hydroxydodecanoate (C) N.D. +0.0 +0.0 -2.2 +0.2
pH Growth at pH7 and (C) Trisodium citrate N.D. -0.2 +0.4 -1.4 -0.7
nitrogen source Putrescine (N) N.D. -0.3 -0.1 -1.8 +0.2
nitrogen source Propandiamine (N) N.D. +0.1 +0.1 -1.9 +0.1
carbon source D-Galacturonic Acid (C) N.D. -0.1 +0.1 -1.9 +0.2
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +0.2 +0.7 -2.4 -0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs N.D. -0.1 +0.2 -1.8 +0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs N.D. -0.2 +0.1 -1.7 +0.4
phage P. putida PUT 7 MOI 1 N.D. +0.4 +0.4 -2.2 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs N.D. -0.2 -0.3 -2.2 +1.7
phage P. putida Sci small MOI 0.1 N.D. +0.5 +0.6 -0.8 -1.3
nitrogen source Urea (N) N.D. -0.1 -0.3 -1.3 +0.7
stress Growth with Chloride 200 mM N.D. -0.3 -0.1 +1.0 -1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.7 +0.1 +1.5 -0.9
carbon source L-Phenylalanine 5 mM (C) N.D. -0.0 -0.1 +1.2 -0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. +0.4 +0.1 +1.1 -0.8
nitrogen source 2,6-diaminopimelic (N) N.D. -0.3 -0.3 +1.2 +0.5
nitrogen source 2,6-diaminopimelic (N) N.D. +0.5 +0.4 +1.1 -0.7
carbon source Sebacic (C) N.D. -0.1 +0.2 +1.6 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +0.1 -0.1 +2.0 +0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +0.8 -0.0 +0.8 +1.2
stress Growth with Chloride 200 mM; with MOPS N.D. +0.7 +0.2 +1.8 +0.4
phage P. putida Missley MOI 0.1 N.D. +1.2 +0.6 +0.8 +1.1
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