Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_2245 and PP_2246 are separated by 114 nucleotidesPP_2246 and PP_2247 are separated by 12 nucleotidesPP_2247 and PP_2248 are separated by 112 nucleotidesPP_2248 and PP_2249 are separated by 53 nucleotides PP_2245: PP_2245 - Transcriptional regulator, Cro/CI family, at 2,561,555 to 2,562,148 _2245 PP_2246: PP_2246 - catabolic D-arginine dehydrogenase, FAD-dependent, at 2,562,263 to 2,563,399 _2246 PP_2247: PP_2247 - putative Endoribonuclease, at 2,563,412 to 2,563,789 _2247 PP_2248: PP_2248 - putative transporter, at 2,563,902 to 2,564,966 _2248 PP_2249: PP_2249 - Methyl-accepting chemotaxis protein PctB, at 2,565,020 to 2,566,951 _2249
Group Condition PP_2245 PP_2246 PP_2247 PP_2248 PP_2249
nitrogen source D-2-Aminobutyric (N) -5.7 +0.4 -0.7 +1.4 -0.5
nitrogen source D-2-Aminobutyric (N) -5.7 +0.1 -0.2 +0.8 -0.1
nitrogen source DL-2-Aminobutyric (N) -4.3 +0.1 -0.5 +0.8 +0.1
nitrogen source 3-aminobutyric (N) -2.1 -0.1 -0.7 +0.1 +0.0
nitrogen source DL-2-Aminobutyric (N) -2.8 +0.0 -0.4 +0.6 +0.1
stress R2A with Fusaric 240 ug/mL -0.8 -0.5 -0.3 +0.1 -0.8
nitrogen source 3-aminobutyric (N) -1.8 -0.0 -0.5 +0.1 -0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 -0.3 -0.8 +0.2 -0.5
temperature shift Temperature shift 30_to_4 +0.0 -0.1 -1.0 -0.4 -0.3
carbon source Crotonic (C) -0.2 -0.1 -1.0 +0.1 -0.6
nitrogen source NAG (N); with MOPS +0.4 -0.0 -1.3 -0.4 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.0 -0.1 -1.4 +0.1 -0.2
phage P. putida Sci small MOI 0.1 -0.3 +0.2 -1.6 -0.2 +0.3
pH Growth at pH6 and (C) Trisodium citrate -0.7 +0.0 +0.4 -0.3 -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.3 -0.4 -1.1 +0.7 +0.9
stress 3-methyl-1-butanol 0.4 vol% +0.1 -0.3 -0.5 -0.1 +0.9
phage P. putida Missley MOI 0.1 -0.2 -0.3 +1.0 +0.2 -0.1
phage P. putida Sci Big MOI 0.1 -0.5 +0.1 +1.3 +0.1 -0.1
phage P. put South MOI 10 +0.2 +0.2 +0.7 -0.4 +0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.7 +0.2 +0.5 +0.4 -0.2
nitrogen source D-Alanine (N) +1.3 +0.2 +0.2 +0.1 +0.2
nitrogen source Ammonium chloride and TNT (N) +0.5 +0.2 +0.4 +0.4 +0.3
nitrogen source D-Alanine (N) +1.3 +0.1 +0.5 -0.0 +0.0
nitrogen source L-Methionine (N) +3.2 -0.2 +0.1 -0.1 -0.2
carbon source L-Leucine (C) +2.9 -0.0 +0.7 -0.2 -0.2
carbon source L-Leucine (C) +2.5 -0.2 +1.0 +0.2 -0.1
nitrogen source L-Methionine (N) +3.4 -0.0 +0.2 -0.2 -0.0
carbon source L-Leucine (C) +3.3 +0.3 +0.6 -0.0 -0.4
nitrogen source Propiolactam (N) +3.9 +0.5 +0.2 +0.2 -0.5
nitrogen source Propiolactam (N) +4.1 -0.1 -0.4 +0.3 +0.4
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