Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_23SF	PP_5SF	PP_2240	PP_2241	PP_2242
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	N.D.	-0.9	-0.0	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	N.D.	-0.7	-0.3	+0.2
nitrogen source	TNT (N)	N.D.	N.D.	+0.3	-0.4	-0.1
temperature	Growth at 30C; with MOPS	N.D.	N.D.	-0.3	+0.3	-0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	N.D.	+0.3	-0.1	-0.3
phage	P. putida South MOI 10	N.D.	N.D.	+0.3	-0.1	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	N.D.	+0.4	-0.0	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	N.D.	+0.5	+0.0	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	N.D.	N.D.	+0.4	-0.3	+0.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	N.D.	N.D.	+0.2	-0.2	+0.3
micoeukaryotes	Tetrahymena sp., Mixed culture-2	N.D.	N.D.	-0.2	+0.2	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	N.D.	N.D.	+0.5	-0.2	+0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	N.D.	+0.2	-0.1	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	N.D.	+0.4	+0.2	-0.1
carbon source	carbon source 2-Deoxy-D-glucose 100 mM	N.D.	N.D.	+0.2	+0.4	-0.0
phage	P. putida compost MOI 0.1	N.D.	N.D.	+0.3	+0.2	+0.2
carbon source	carbon source 2-Deoxy-D-glucose 50 mM	N.D.	N.D.	+0.4	+0.3	-0.0
stress	R2A with Fusaric 480 ug/mL	N.D.	N.D.	+0.4	+0.2	+0.1
reactor	24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.	N.D.	N.D.	+0.4	+0.1	+0.1
carbon source	ferulate (C); with MOPS	N.D.	N.D.	+0.2	-0.0	+0.6
phage	P. putida Sci small MOI 0.1	N.D.	N.D.	+0.2	+0.3	+0.3
stress	R2A with Fusaric 480 ug/mL	N.D.	N.D.	+0.5	+0.2	+0.1
phage	P. put South MOI 10	N.D.	N.D.	+0.4	+0.3	+0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	N.D.	N.D.	+0.4	+0.3	+0.2
pH	pH 4	N.D.	N.D.	+0.2	+0.4	+0.2
phage	P. putida Sci small MOI 0.1	N.D.	N.D.	+0.4	+0.1	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	N.D.	N.D.	+0.5	+0.4	+0.3
phage	P. putida PUT 7 MOI 1	N.D.	N.D.	+0.7	+0.3	+0.2
phage	P. putida Missley MOI 0.1	N.D.	N.D.	+0.4	+0.5	+0.4
phage	P. putida Sci Big MOI 0.1	N.D.	N.D.	+0.6	+0.6	+0.3