Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2235	PP_2236	PP_2237	PP_2238	PP_5504
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.1	-0.3	-0.0	-0.5	-1.0
phage	PUT8 MOI 0.1	+0.3	-0.2	-0.3	-0.1	-1.4
phage	P. put PUT 10 MOI 1	-0.2	-0.2	-0.1	+0.2	-1.0
phage	P. put PUT 10 MOI 10	-0.1	-0.1	+0.0	+0.1	-1.2
nitrogen source	nitrogen source nitrite 1mM	-0.4	+0.0	+0.1	-0.2	-0.7
phage	P. put PUT 10 MOI 10	+0.1	-0.0	-0.0	+0.1	-1.2
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.1	-0.3	+0.1	+0.2	-0.8
nitrogen source	Urea (N)	+0.3	-0.1	-0.2	-0.5	-0.3
carbon source	Valerolactone (C)	+0.3	-0.0	-0.1	+0.2	-1.2
micoeukaryotes	Tetrahymena sp., Mixed culture-2	+0.3	-0.1	+0.1	-0.6	-0.4
carbon source	Octanoic (C)	-0.5	-0.0	+0.0	-0.5	+0.5
phage	PUT 8 MOI 1	+0.4	+0.2	-0.3	+0.1	-0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.3	-0.0	-0.1	-0.6	+0.8
phage	PUT8 MOI 0.1	+0.7	-0.1	-0.2	+0.1	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.1	+0.3	-0.0	+0.4	-0.9
pH	Growth at pH9 and (C) Trisodium citrate	+0.5	-0.1	-0.0	+0.5	-0.6
carbon source	D-Glucose (C)	-0.6	-0.1	+0.2	+0.2	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.2	+0.4	+0.1	+0.4	-0.8
nitrogen source	nitrate (N)	+0.4	-0.3	+0.1	-0.1	+0.5
carbon source	ferulate (C); with MOPS	+0.6	+0.1	+0.3	-0.5	+0.3
pH	Growth at pH6 and (C) D-Glucose	+0.5	+0.3	-0.0	-0.3	+0.6
temperature shift	Temperature shift 30_to_25	+0.8	-0.0	+0.1	+0.3	-0.2
carbon source	D-Glucose (C)	+0.4	+0.1	-0.2	-0.0	+0.9
nitrogen source	Urea (N)	-0.0	+0.2	-0.1	+0.5	+0.7
temperature shift	Temperature shift 30_to_25; with MOPS	+0.7	+0.2	+0.0	-0.2	+0.5
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.4	-0.1	-0.1	+0.2	+1.0
nitrogen source	NAG (N); with MOPS	+0.5	+0.3	+0.2	+0.1	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+0.2	+0.4	+0.3	+0.6
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+0.2	+0.2	-0.1	+1.4
phage	P. putida Missley MOI 0.1	+0.4	+0.1	+0.4	+0.7	+0.8