Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_2226 and PP_2227 overlap by 4 nucleotidesPP_2227 and PP_2228 overlap by 4 nucleotidesPP_2228 and PP_2229 overlap by 4 nucleotidesPP_2229 and PP_2230 overlap by 1 nucleotides PP_2226: PP_2226 - putative K(+)/H(+) antiporter subunit F, at 2,533,343 to 2,533,621 _2226 PP_2227: PP_2227 - putative Multicomponent potassium-proton antiporter, subunit E, at 2,533,618 to 2,534,106 _2227 PP_2228: PP_2228 - putative K(+)/H(+) antiporter subunit D, at 2,534,103 to 2,535,782 _2228 PP_2229: PP_2229 - putative K(+)/H(+) antiporter subunit C, at 2,535,779 to 2,536,123 _2229 PP_2230: PP_2230 - putative K(+)/H(+) antiporter subunit A/B, at 2,536,123 to 2,539,038 _2230
Group Condition PP_2226 PP_2227 PP_2228 PP_2229 PP_2230
nitrogen source spermidine (N) -1.3 -1.2 -1.2 -0.6 -0.9
pH Growth at pH9 and (C) D-Glucose -0.9 -0.6 -1.0 -1.6 -0.7
pH Growth at pH9 and (C) D-Glucose -0.9 -1.3 -0.7 -0.7 -0.8
nitrogen source spermidine (N) -0.8 -0.7 -0.9 -0.6 -0.9
nitrogen source Propandiamine (N) -1.0 -2.0 -0.4 -0.2 -0.2
nitrogen source NAG (N); with MOPS -1.2 -0.6 -0.3 -1.6 +0.2
carbon source D-Glucose (C) -0.3 -0.1 +0.3 -3.2 -0.2
pH Growth at pH9 and (C) D-Glucose -0.7 -0.7 -0.4 -0.8 -0.6
pH Growth at pH9 and (C) D-Glucose -0.5 -0.7 -0.4 -0.9 -0.3
pH Growth at pH6 and (C) D-Glucose -0.9 -1.8 -0.1 +0.4 -0.2
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X -0.6 -0.7 -0.2 -0.7 -0.3
stress LB_noSalt with Chloride 1100 mM -0.5 -0.5 -0.4 -0.5 -0.6
nitrogen source nitrogen source nitrite 0.5mM +0.4 -1.2 -0.4 -0.8 -0.3
pH Valerolactone (C) pH 6.5 -0.3 +0.1 +0.2 -1.7 -0.1
carbon source acetate (C) -1.4 +0.0 +0.4 -1.2 +0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.8 -0.9 +0.0 -1.4 +0.0
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 +0.6 -0.6 -0.4 -0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.6 -0.4 +0.1 -1.2 +0.1
carbon source Trisodium citrate (C) -0.7 +0.2 -1.0 +0.7 -0.0
nitrogen source Urea (N) +0.7 -1.3 -0.4 +0.0 +0.2
nitrogen source NAG (N); with MOPS -1.0 -0.6 -0.1 +1.1 +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.9 +0.5 -0.1 -1.4 -0.1
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.0 -0.7 +0.5 -1.0 +0.1
phage P. putida South MOI 10 +0.6 +0.6 +0.4 -1.2 -0.1
carbon source ferulate (C); with MOPS -1.1 +0.6 +0.1 +0.5 +0.2
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 +0.7 -0.4 +0.3 +0.5
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM +0.3 +0.6 +0.7 +0.6 +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.6 +1.0 +0.5 +0.7 +0.1
phage P. putida Missley MOI 0.1 +0.9 +0.1 +0.6 +1.2 +0.4
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM +1.1 +0.8 +0.5 +0.5 +0.6
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