Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2190	PP_2191	PP_2192	PP_2193	PP_2194
phage	P. putida Sci Big MOI 0.1	N.D.	-0.2	-2.0	-0.3	-0.6
phage	P. putida Sci small MOI 0.1	N.D.	+0.0	+0.2	-0.7	-1.6
stress	R2A with Fusaric 480 ug/mL	N.D.	-0.2	-0.6	-0.1	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	N.D.	-0.4	-0.9	+0.0	+0.1
pH	pH 9	N.D.	-0.7	-0.1	+0.1	-0.6
carbon source	carbon source D-Glucose 55.5 mM	N.D.	-0.9	+0.2	-0.1	-0.3
stress	R2A with Polymyxin B sulfate 0.001 mg/ml	N.D.	+0.2	-1.1	-0.0	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	N.D.	-0.4	-0.8	+0.3	-0.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	N.D.	-0.6	+0.4	+0.0	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	N.D.	+0.4	-0.7	-0.1	-0.3
phage	P. putida PUT 7 MOI 1	N.D.	-0.9	-0.0	-0.1	+0.7
temperature	Growth at 25C; with MOPS	N.D.	+0.4	-0.7	+0.2	-0.2
carbon source	ferulate (C); with MOPS	N.D.	+0.2	-0.9	+0.0	+0.4
nitrogen source	nitrogen source nitrite 1mM	N.D.	-0.4	+0.6	+0.1	-0.5
pH	Growth at pH7 and (C) D-Glucose	N.D.	-0.8	+0.9	-0.0	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	N.D.	+0.5	-1.4	+0.1	+0.9
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM	N.D.	+0.5	-0.7	-0.1	+0.4
carbon source	D-Lysine 10 mM (C)	N.D.	+0.5	+0.4	+0.1	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	-0.1	+0.9	-0.1	-0.4
nitrogen source	NAG (N); with MOPS	N.D.	-0.6	+0.5	+0.1	+0.4
pH	Growth at pH8 and (C) D-Glucose	N.D.	-0.4	+0.5	-0.1	+0.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.2	+0.7	+0.3	-0.3
micoeukaryotes	Tetrahymena sp., Mixed culture-1	N.D.	+0.7	-0.1	-0.1	+0.5
nitrogen source	D-2-Aminobutyric (N)	N.D.	+0.3	+1.2	-0.2	-0.2
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.0	+0.8	-0.1	+0.6
nitrogen source	D-2-Aminobutyric (N)	N.D.	-0.3	+0.5	+0.1	+1.0
temperature shift	Temperature shift 30_to_34; with MOPS	N.D.	+0.5	+0.7	-0.2	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	+0.3	+1.2	-0.0	+0.0
micoeukaryotes	Tetrahymena sp., Mixed culture-2	N.D.	+0.3	-0.1	+0.3	+1.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.5	+0.3	+0.0	+0.9