Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2182	PP_2183	PP_2184	PP_2185	PP_2186
phage	P. putida Sci Big MOI 0.1	N.D.	-0.4	-0.7	-0.4	-2.4
phage	P. putida Sci small MOI 0.1	N.D.	-1.1	-0.0	-0.2	-2.4
carbon source	L-Phenylalanine 5 mM (C)	N.D.	-0.1	-0.1	-0.0	-1.6
phage	PUT 8 MOI 1	N.D.	-0.0	+0.0	-0.0	-1.6
nitrogen source	nitrogen source nitrite 0.5mM	N.D.	-0.2	-0.1	-0.1	-1.0
nitrogen source	2,6-diaminopimelic (N)	N.D.	-0.7	-0.0	-0.2	-0.5
pH	Growth at pH9 and (C) Trisodium citrate	N.D.	-0.3	-0.2	-0.3	-0.6
carbon source	Delta-Dodecalactone (C)	N.D.	-0.4	+0.0	+0.1	-1.1
micoeukaryotes	Dictyostellum sp.mixed culture-1	N.D.	-0.4	+0.1	-0.0	-1.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	N.D.	+0.1	+0.0	-0.2	-1.1
micoeukaryotes	Tetrahymena sp., Mixed culture-2	N.D.	-0.6	-0.2	+0.1	-0.5
carbon source	Tween 20 (C)	N.D.	+0.0	+0.1	-0.1	-1.1
pH	Growth at pH6 and (C) Trisodium citrate	N.D.	-0.1	+0.1	+0.1	-1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	-0.2	-0.1	+0.2	-0.9
carbon source	D-Glucose (C)	N.D.	+0.3	-0.3	-0.2	-0.7
carbon source	pyruvate (C)	N.D.	+0.4	+0.1	-0.0	-1.2
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.	N.D.	+0.4	-0.0	+0.1	-1.1
stress	Cholinium alpha ketoglutarate 10 vol%	N.D.	+0.5	+0.0	+0.1	-0.8
carbon source	carbon source 3-O-methyl-glucose 50 mM	N.D.	-0.7	-0.1	-0.1	+0.7
temperature	Growth at 30C	N.D.	-0.4	-0.1	-0.1	+0.8
temperature shift	Temperature shift 30_to_21; with MOPS	N.D.	-0.5	-0.3	+0.0	+1.0
carbon source	carbon source 4-vinylphenol 0.1 mM	N.D.	-0.2	-0.1	-0.3	+0.9
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.5	+0.1	+0.4	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	N.D.	-0.1	-0.2	-0.2	+1.2
stress	Cholinium glutamate 10 vol%	N.D.	-0.5	-0.0	+0.1	+1.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	N.D.	+0.3	-0.1	-0.3	+0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.4	+0.2	+0.7	+0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.5	+0.1	-0.4	+1.0
carbon source	carbon source Glycerol 108.6 mM	N.D.	+0.1	+0.1	-0.1	+1.4
nitrogen source	D-2-Aminobutyric (N)	N.D.	+1.0	+0.3	+0.2	+0.3