Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2176	PP_2177	PP_2178	PP_2179	PP_2180
nitrogen source	1,6-Hexanediamine (N)	-0.1	-1.1	-1.0	-0.5	-1.3
nitrogen source	1,6-Hexanediamine (N)	+0.1	-1.3	-0.9	-0.5	-1.2
nitrogen source	Cadaverine (N)	+0.1	-1.2	-0.3	-0.2	-1.3
nitrogen source	Cadaverine (N)	+0.1	-1.3	-0.2	-0.1	-1.2
micoeukaryotes	Acanthamoeba sp., muxed culture-2	-0.3	-1.2	-1.8	+1.0	-0.3
phage	P. putida PUT 7 MOI 1	-0.7	-1.8	+0.1	-0.3	+0.3
micoeukaryotes	C.elegans, mixed culture-2	+0.4	-0.8	-1.2	-0.2	-0.2
carbon source	ferulate (C); with MOPS	+0.3	-1.0	-0.3	-0.4	-0.4
pH	Growth at pH8 and (C) D-Glucose	-0.5	-1.8	+0.3	+0.1	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.5	-1.3	+0.1	-0.2	+0.3
carbon source	ferulate (C); with MOPS	-0.3	-0.5	-0.9	-0.1	+0.1
temperature shift	Temperature shift 30_to_10; with MOPS	-0.5	+0.1	-0.1	-0.8	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	-0.6	-0.6	-0.6	+0.1
carbon source	D-Glucose (C)	+0.2	-1.0	-0.2	-0.3	-0.1
phage	P. putida Sci Big MOI 0.1	+0.3	-1.0	-0.3	-0.3	+0.1
nitrogen source	Urea (N)	-0.2	-0.8	-0.4	+0.4	+0.2
carbon source	Nonanoic (C)	+0.4	-0.9	+0.1	-0.2	+0.2
nitrogen source	NAG (N); with MOPS	+0.1	-0.1	+0.4	-1.1	+0.4
micoeukaryotes	Tetrahymena sp., Mixed culture-2	+0.3	+0.7	+0.1	-0.4	-0.2
phage	P. putida Sci small MOI 0.1	+0.6	+0.4	-0.6	-0.2	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6	-0.1	+1.1	+0.3	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.7	+0.5	+0.2	+0.6	+0.1
nitrogen source	D-2-Aminobutyric (N)	+0.5	-0.5	+0.1	+0.3	+0.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	+1.1	-0.2	+0.1	-0.3
carbon source	carbon source 2-Deoxy-D-glucose 50 mM	-0.3	+0.7	+0.5	-0.2	+0.2
nitrogen source	D-2-Aminobutyric (N)	-0.0	-0.2	+0.6	+0.2	+0.9
nitrogen source	Caprolactam (N)	+0.1	+0.4	+0.4	+1.0	+0.0
nitrogen source	Caprolactam (N)	-0.3	+0.6	+0.8	+1.8	+0.0
nitrogen source	Caprolactam (N)	-0.0	+0.4	+0.8	+1.6	+0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.6	+0.7	+0.4	+0.4	+0.1