Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2170	PP_2171	PP_2172	PP_2173	PP_2174
temperature shift	Temperature shift 30_to_21; with MOPS	+0.2	-1.7	-1.1	-0.1	-0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	-1.1	-1.1	+0.3	-0.4
nitrogen source	nitrite (N)	-0.4	-0.9	-0.7	-0.3	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.1	-0.7	-0.2	-0.4	-0.8
carbon source	D-Glucose (C)	+0.5	-1.1	-1.0	+0.0	-0.5
nitrogen source	Urea (N)	-0.2	-0.2	-1.2	-0.2	-0.3
carbon source	carbon source 3-O-methyl-glucose 10 mM	+0.1	-0.7	-0.4	-0.7	-0.3
carbon source	Ethyl decanoate and D-Glucose (C)s	-0.4	-1.6	+0.1	-0.2	-0.0
pH	Growth at pH6 and (C) Trisodium citrate	+0.2	-0.6	-1.0	-0.5	-0.1
carbon source	Rhamnogalacturonan - from potato (C)	-0.2	-1.2	-0.4	-0.0	-0.1
temperature	Growth at 30C; with MOPS	+0.1	-0.9	-0.6	-0.4	-0.0
pH	Growth at pH6 and (C) Trisodium citrate	-0.3	-0.7	-0.6	+0.1	-0.3
r2a control with 0.2x vogels	R2A control with 0.2X Vogels	-0.3	-0.7	-0.9	-0.0	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.1	-1.2	-0.7	+0.0	+0.2
pH	pH 7	+0.2	+0.2	+0.1	-1.2	-0.7
nitrogen source	Ammonium chloride (N); with MOPS	+0.5	-1.6	-0.1	+0.1	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.3	-1.1	+0.1	-0.1	-0.4
carbon source	Tween 20 (C)	-0.5	-0.8	+0.4	+0.4	-0.6
temperature shift	Temperature shift 10_to_34; with MOPS	+0.1	-0.9	-0.4	+0.4	-0.3
carbon source	carbon source 4-vinylphenol 0.01 mM	-0.2	+0.5	+0.5	-1.0	-0.7
carbon source	L-Leucine (C)	-0.1	+0.5	-1.4	+0.2	+0.0
nitrogen source	Urea (N); with MOPS	+0.3	-0.8	+0.3	-0.3	-0.2
pH	Growth at pH7 and (C) Trisodium citrate	+0.1	-0.9	+0.4	+0.3	-0.6
phage	P. putida Sci small MOI 0.1	+0.3	-0.5	-0.9	+0.4	+0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	-0.5	+0.9	-0.1	-0.7
nitrogen source	Urea (N)	+0.3	+0.3	-0.9	+0.2	+0.3
nitrogen source	nitrogen source nitrite 1mM	+0.2	-0.7	+0.5	+0.7	-0.1
stress	Butanol 0.6 vol%	+0.4	+0.4	+0.4	+0.4	-0.6
carbon source	3-methyl-1-butanol 0.25 vol% (C)	+0.1	+1.0	+0.5	-0.2	-0.4
phage	P. putida PUT 7 MOI 1	+0.7	+0.1	+1.1	-0.4	+0.3