Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_2159 and PP_2160 are separated by 68 nucleotidesPP_2160 and PP_2161 are separated by 31 nucleotidesPP_2161 and PP_2162 are separated by 122 nucleotidesPP_2162 and PP_2163 are separated by 201 nucleotides PP_2159: PP_2159 - Copper-binding protein, plastocyanin/azurin family, at 2,466,515 to 2,467,042 _2159 PP_2160: PP_2160 - NADPH-dependent 7-cyano-7-deazaguanine reductase, at 2,467,111 to 2,467,941 _2160 PP_2161: PP_2161 - conserved protein of unknown function, at 2,467,973 to 2,468,236 _2161 PP_2162: PP_2162 - putative phosphonoacetaldehyde phosphonohydrolase-related protein, at 2,468,359 to 2,468,922 _2162 PP_2163: PP_2163 - VacJ lipoprotein, at 2,469,124 to 2,469,831 _2163
Group Condition PP_2159 PP_2160 PP_2161 PP_2162 PP_2163
stress Geraniol 1 vol% -0.3 -1.6 N.D. N.D. -4.9
stress MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL -1.0 -0.3 N.D. N.D. -5.0
carbon source 2,3-Butanediol (C) -0.0 -1.5 N.D. N.D. -4.5
pH Growth at pH6 and (C) D-Glucose -1.7 -2.6 N.D. N.D. -1.4
stress R2A with Fusaric 480 ug/mL -0.1 -0.2 N.D. N.D. -5.4
stress 2-Ethylhexanol 0.4 vol% -0.3 -0.2 N.D. N.D. -4.9
carbon source Delta-Decalactone (C) +0.4 -1.7 N.D. N.D. -4.0
carbon source ferulate (C); with MOPS -0.8 +0.1 N.D. N.D. -4.4
stress MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL +0.2 -0.2 N.D. N.D. -4.9
nitrogen source Ammonium chloride and TNT (N) -0.3 +0.2 N.D. N.D. -4.7
carbon source Delta-Undecalactone (C) -0.1 -2.1 N.D. N.D. -2.4
stress pinene 10 vol% -0.1 -1.4 N.D. N.D. -3.1
stress R2A with Fusaric 480 ug/mL -0.3 +0.1 N.D. N.D. -4.5
stress R2A with Fusaric 480 ug/mL -0.5 -0.0 N.D. N.D. -3.8
carbon source Ferulic Acid (C) -0.5 -0.5 N.D. N.D. -3.4
nitrogen source Ammonium chloride and TNT (N) -0.0 +0.1 N.D. N.D. -4.3
phage P. putida South MOI 10 -0.1 +0.3 N.D. N.D. -4.2
carbon source Delta-Decalactone (C) +0.2 -0.9 N.D. N.D. -3.3
carbon source ferulate (C); with MOPS +0.2 +0.4 N.D. N.D. -4.4
stress R2A with Fusaric 480 ug/mL +0.2 +0.2 N.D. N.D. -4.0
carbon source ferulate (C); with MOPS -0.3 +0.4 N.D. N.D. -3.6
carbon source 3-methyl-1-butanol 0.1 vol% (C) +0.4 -0.9 N.D. N.D. -2.8
phage P. putida South MOI 10 -0.4 +1.1 N.D. N.D. -3.9
phage P. put South MOI 10 -0.5 +0.6 N.D. N.D. -3.4
nitrogen source Ammonium chloride and TNT (N) -0.3 +0.6 N.D. N.D. -3.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +0.2 -3.6 N.D. N.D. +0.4
phage P. put PUT 10 MOI 0.1 +0.3 +1.0 N.D. N.D. -3.2
phage P. putida South MOI 0.1 +0.2 +1.6 N.D. N.D. -2.8
phage P. putida South MOI 1 -0.1 +1.9 N.D. N.D. -2.5
phage P. putida South MOI 0.1 +0.2 +1.7 N.D. N.D. -2.4
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