Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_2153 and PP_2154 are separated by 198 nucleotidesPP_2154 and PP_2155 overlap by 8 nucleotidesPP_2155 and PP_2156 are separated by 60 nucleotidesPP_2156 and PP_2157 are separated by 39 nucleotides PP_2153: PP_2153 - conserved protein of unknown function, at 2,460,324 to 2,460,803 _2153 PP_2154: PP_2154 - LolC, at 2,461,002 to 2,462,252 _2154 PP_2155: PP_2155 - Lipoprotein-releasing system ATP-binding protein LolD, at 2,462,245 to 2,462,943 _2155 PP_2156: PP_2156 - Lipoprotein releasing system, permease protein, at 2,463,004 to 2,464,245 _2156 PP_2157: PP_2157 - Sensor histidine kinase, at 2,464,285 to 2,465,637 _2157
Group Condition PP_2153 PP_2154 PP_2155 PP_2156 PP_2157
phage P. putida Sci small MOI 0.1 -3.5 N.D. N.D. N.D. -0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -1.7 N.D. N.D. N.D. -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -1.6 N.D. N.D. N.D. -0.1
carbon source Tween 20 (C) -1.7 N.D. N.D. N.D. +0.0
carbon source ferulate (C); with MOPS -1.7 N.D. N.D. N.D. +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -1.6 N.D. N.D. N.D. +0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.3 N.D. N.D. N.D. -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -1.3 N.D. N.D. N.D. -0.0
carbon source 2-Methylbutanoic (C) -0.9 N.D. N.D. N.D. -0.4
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.9 N.D. N.D. N.D. -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -1.3 N.D. N.D. N.D. +0.0
carbon source ferulate (C); with MOPS -0.8 N.D. N.D. N.D. -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -1.0 N.D. N.D. N.D. -0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -1.1 N.D. N.D. N.D. -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.0 N.D. N.D. N.D. -0.2
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.0 N.D. N.D. N.D. -0.1
pH pH 6 -1.2 N.D. N.D. N.D. +0.2
pH pH 4 -1.1 N.D. N.D. N.D. +0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.1 N.D. N.D. N.D. +0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.1 N.D. N.D. N.D. +0.1
carbon source 3-Hydroxypropionate (C) -1.1 N.D. N.D. N.D. +0.1
temperature shift Temperature shift 10_to_30; with MOPS -1.1 N.D. N.D. N.D. +0.2
carbon source carbon source Bisabolol 45 mM -1.1 N.D. N.D. N.D. +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -1.0 N.D. N.D. N.D. +0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.9 N.D. N.D. N.D. +0.2
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.1 N.D. N.D. N.D. +0.4
stress Growth with Chloride 200 mM; with MOPS -1.1 N.D. N.D. N.D. +0.4
phage P. putida PUT 7 MOI 1 +0.9 N.D. N.D. N.D. -0.5
stress R2A with Polymyxin B sulfate 0.001 mg/ml +0.8 N.D. N.D. N.D. +0.4
carbon source 3-methyl-1-butanol 0.1 vol% (C) +1.3 N.D. N.D. N.D. +0.0
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