Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_2152 and PP_2153 are separated by 31 nucleotidesPP_2153 and PP_2154 are separated by 198 nucleotidesPP_2154 and PP_2155 overlap by 8 nucleotidesPP_2155 and PP_2156 are separated by 60 nucleotides PP_2152: PP_2152 - glycerophosphoryl diester phosphodiesterase, at 2,459,576 to 2,460,292 _2152 PP_2153: PP_2153 - conserved protein of unknown function, at 2,460,324 to 2,460,803 _2153 PP_2154: PP_2154 - LolC, at 2,461,002 to 2,462,252 _2154 PP_2155: PP_2155 - Lipoprotein-releasing system ATP-binding protein LolD, at 2,462,245 to 2,462,943 _2155 PP_2156: PP_2156 - Lipoprotein releasing system, permease protein, at 2,463,004 to 2,464,245 _2156
Group Condition PP_2152 PP_2153 PP_2154 PP_2155 PP_2156
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -4.0 -1.7 N.D. N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -4.3 -0.9 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -3.4 -1.3 N.D. N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -3.8 -0.7 N.D. N.D. N.D.
phage P. putida Sci small MOI 0.1 -0.7 -3.5 N.D. N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -2.8 -1.0 N.D. N.D. N.D.
carbon source ferulate (C); with MOPS -1.9 -1.7 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -1.7 -1.6 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.8 -0.9 N.D. N.D. N.D.
pH pH 4 -1.3 -1.1 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.4 -1.0 N.D. N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.3 -1.0 N.D. N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -2.1 -0.2 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.1 -1.1 N.D. N.D. N.D.
micoeukaryotes Dictyostellum sp.mixed culture-2 -1.3 -0.9 N.D. N.D. N.D.
nitrogen source Propandiamine (N) -1.8 -0.4 N.D. N.D. N.D.
carbon source carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM -1.8 -0.4 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.7 -0.4 N.D. N.D. N.D.
carbon source carbon source 4-vinylphenol 0.01 mM -1.7 -0.5 N.D. N.D. N.D.
carbon source Valerolactone (C) -2.4 +0.3 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.6 -0.4 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -1.2 -0.8 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.3 -0.6 N.D. N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -2.3 +0.7 N.D. N.D. N.D.
carbon source Ethyl decanoate and D-Glucose (C)s -1.8 +0.4 N.D. N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -1.5 +0.5 N.D. N.D. N.D.
carbon source Trisodium citrate 10 mM (C) -1.7 +0.7 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -1.5 +0.7 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.6 +0.9 N.D. N.D. N.D.
carbon source 3-methyl-1-butanol 0.1 vol% (C) +1.6 +1.3 N.D. N.D. N.D.
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