Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_2150 and PP_2151 are separated by 204 nucleotidesPP_2151 and PP_2152 are separated by 48 nucleotidesPP_2152 and PP_2153 are separated by 31 nucleotidesPP_2153 and PP_2154 are separated by 198 nucleotides PP_2150: PP_2150 - putative Thiamine biosynthesis lipoprotein, at 2,456,930 to 2,457,928 _2150 PP_2151: PP_2151 - soluble pyridine nucleotide transhydrogenase, at 2,458,133 to 2,459,527 _2151 PP_2152: PP_2152 - glycerophosphoryl diester phosphodiesterase, at 2,459,576 to 2,460,292 _2152 PP_2153: PP_2153 - conserved protein of unknown function, at 2,460,324 to 2,460,803 _2153 PP_2154: PP_2154 - LolC, at 2,461,002 to 2,462,252 _2154
Group Condition PP_2150 PP_2151 PP_2152 PP_2153 PP_2154
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.4 N.D. -4.0 -1.7 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.2 N.D. -4.3 -0.9 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.2 N.D. -3.4 -1.3 N.D.
phage P. putida Sci small MOI 0.1 -0.6 N.D. -0.7 -3.5 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.0 N.D. -3.8 -0.7 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.2 N.D. -2.8 -1.0 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.2 N.D. -1.7 -1.6 N.D.
carbon source ferulate (C); with MOPS +0.1 N.D. -1.9 -1.7 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.2 N.D. -1.8 -0.9 N.D.
nitrogen source NAG (N); with MOPS -1.5 N.D. -1.0 -0.2 N.D.
pH pH 4 -0.3 N.D. -1.3 -1.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8 N.D. -0.8 -1.1 N.D.
nitrogen source Propandiamine (N) -0.4 N.D. -1.8 -0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.2 N.D. -1.4 -1.0 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.5 N.D. -1.1 -0.7 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.1 N.D. -1.1 -1.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 N.D. -1.3 -0.6 N.D.
carbon source Valerolactone (C) -0.1 N.D. -2.4 +0.3 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.1 N.D. -1.3 -1.0 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.2 N.D. -2.1 -0.2 N.D.
carbon source carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM +0.2 N.D. -1.8 -0.4 N.D.
carbon source carbon source 4-vinylphenol 0.01 mM +0.3 N.D. -1.7 -0.5 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.1 N.D. -2.3 +0.7 N.D.
carbon source Ethyl decanoate and D-Glucose (C)s -0.2 N.D. -1.8 +0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.5 N.D. -1.2 -0.8 N.D.
carbon source Trisodium citrate 10 mM (C) -0.3 N.D. -1.7 +0.7 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 N.D. -1.6 +0.9 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.3 N.D. -1.5 +0.5 N.D.
phage P. putida Sci small MOI 0.1 -0.8 N.D. +1.0 +0.6 N.D.
carbon source 3-methyl-1-butanol 0.1 vol% (C) -0.1 N.D. +1.6 +1.3 N.D.
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