Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_2143 and PP_2144 are separated by 215 nucleotidesPP_2144 and PP_2145 are separated by 177 nucleotidesPP_2145 and PP_2146 are separated by 142 nucleotidesPP_2146 and PP_2147 are separated by 4 nucleotides PP_2143: PP_2143 - transcriptional repressor, at 2,444,903 to 2,445,511 _2143 PP_2144: PP_2144 - Transcriptional regulator, TetR family, at 2,445,727 to 2,446,434 _2144 PP_2145: PP_2145 - beta-N-acetylglucosaminidase, at 2,446,612 to 2,447,622 _2145 PP_2146: PP_2146 - helicase SNF2/RAD54 family, at 2,447,765 to 2,451,082 _2146 PP_2147: PP_2147 - conserved exported protein of unknown function, at 2,451,087 to 2,451,659 _2147
Group Condition PP_2143 PP_2144 PP_2145 PP_2146 PP_2147
phage PUT 8 MOI 1 N.D. +1.4 -6.6 +0.1 -7.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs N.D. -3.2 -4.7 +0.3 -0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs N.D. -1.9 -4.2 +0.1 -1.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs N.D. -1.8 -4.9 +0.1 -0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs N.D. -2.4 -4.5 +0.2 -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs N.D. -2.9 -3.6 +0.1 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs N.D. -1.8 -1.3 -0.0 -3.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs N.D. -3.7 -3.3 +0.5 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs N.D. -2.1 -4.0 +0.2 -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs N.D. -2.5 -2.9 +0.2 -0.8
micoeukaryotes C.elegans, mixed culture-2 N.D. -2.6 -3.3 +0.3 -0.2
phage PUT8 MOI 10 N.D. +0.6 -6.8 -0.0 +0.5
phage PUT8 MOI 0.1 N.D. +1.4 -6.7 -0.2 -0.0
carbon source Delta-Undecalactone (C) N.D. +0.4 -6.2 +0.2 +0.1
phage PUT8 MOI 10 N.D. +1.0 -6.9 +0.1 +0.5
phage PUT8 MOI 0.1 N.D. +1.6 -6.6 -0.3 +0.5
phage P. put PUT 10 MOI 10 N.D. +1.4 -5.1 -0.2 -0.6
phage P. put South MOI 0.1 N.D. +1.5 -4.8 -0.2 -0.7
phage P. putida PUT10 MOI 1 N.D. +1.7 -4.5 -0.2 -1.2
phage P. put South MOI 1 N.D. +1.3 -5.0 -0.5 +0.0
phage P. put PUT 10 MOI 1 N.D. +1.2 -5.1 -0.0 +0.0
phage P. put South MOI 1 N.D. +1.7 -5.0 -0.3 -0.0
phage P. putida PUT10 MOI 0.1 N.D. +1.4 -4.5 -0.3 -0.4
phage P. putida PUT10 MOI 10 N.D. +1.7 -4.6 -0.0 -0.2
phage P. put PUT 10 MOI 10 N.D. +1.4 -4.9 -0.1 +0.6
carbon source Delta-Dodecalactone (C) N.D. +4.3 -3.6 +0.3 -0.3
carbon source Delta-Dodecalactone (C) N.D. +4.0 -2.4 +0.3 +0.1
carbon source 4-Hydroxyvalerate (C) (40mM) N.D. +5.0 -1.0 +0.1 -0.5
carbon source 4-Hydroxyvalerate (C) (40mM) N.D. +4.8 -1.2 +0.3 -0.2
carbon source Delta-Nonalactone (C) N.D. +7.1 -2.5 +0.3 -1.0
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