Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_2117 and PP_2118 are separated by 114 nucleotidesPP_2118 and PP_2119 are separated by 186 nucleotidesPP_2119 and PP_2120 are separated by 120 nucleotidesPP_2120 and PP_t62 are separated by 106 nucleotides PP_2117: PP_2117 - Erythronate-4-phosphate dehydrogenase, at 2,415,325 to 2,416,467 _2117 PP_2118: PP_2118 - conserved protein of unknown function, at 2,416,582 to 2,416,779 _2118 PP_2119: PP_2119 - putative ABC efflux transporter, permease/ATP-binding protein, at 2,416,966 to 2,418,729 _2119 PP_2120: PP_2120 - Methyl-accepting chemotaxis protein CtpH, at 2,418,850 to 2,420,517 _2120 PP_t62: PP_t62 - tRNA-Pro, at 2,420,624 to 2,420,700 _t62
Group Condition PP_2117 PP_2118 PP_2119 PP_2120 PP_t62
phage P. putida PUT 7 MOI 1 N.D. -2.4 +0.2 -0.2 N.D.
carbon source Trisodium citrate (C) N.D. -1.6 -0.4 -0.2 N.D.
nitrogen source 2,6-diaminopimelic (N) N.D. -1.8 -0.1 -0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -1.4 +0.0 -0.5 N.D.
carbon source Lauric (C) N.D. -1.6 -0.0 -0.1 N.D.
pH Valerolactone (C) pH 6.5 N.D. -1.7 +0.3 -0.2 N.D.
temperature shift Temperature shift 30_to_25; with MOPS N.D. -1.3 -0.1 -0.1 N.D.
phage P. put South MOI 10 N.D. -1.5 -0.2 +0.2 N.D.
carbon source Sebacic (C) N.D. -1.2 +0.1 -0.2 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs N.D. -1.3 +0.0 -0.0 N.D.
carbon source Delta-Decalactone (C) N.D. -1.2 -0.1 +0.1 N.D.
nitrogen source NAG (N); with MOPS N.D. -1.4 -0.1 +0.2 N.D.
pH Growth at pH7 and (C) Trisodium citrate N.D. -0.8 +0.3 -0.4 N.D.
pH pH 4 N.D. -1.4 +0.1 +0.3 N.D.
carbon source D-Glucose (C) N.D. -1.2 +0.1 +0.2 N.D.
phage P. putida Sci small MOI 0.1 N.D. -0.9 +0.4 -0.2 N.D.
temperature shift Temperature shift 30_to_25; with MOPS N.D. -1.0 +0.4 -0.2 N.D.
carbon source D-Glucose (C) N.D. -1.1 +0.3 +0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. -1.0 +0.1 +0.3 N.D.
carbon source carbon source 3-O-methyl-glucose 50 mM N.D. +1.0 +0.3 -0.4 N.D.
carbon source 4-Methyl-2-oxopentanoic (C) N.D. +0.7 -0.2 +0.4 N.D.
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. +1.2 +0.0 -0.2 N.D.
carbon source carbon source 4-vinylphenol 0.1 mM N.D. +1.1 +0.2 -0.1 N.D.
dilutelb LB 0.1x with 55.5 mM D-Glucose N.D. +0.6 +0.3 +0.4 N.D.
pH pH 8 N.D. +0.7 +0.4 +0.2 N.D.
carbon source acetate (C) N.D. +1.2 +0.0 +0.2 N.D.
pH pH 6 N.D. +1.1 +0.2 +0.1 N.D.
pH pH 5 N.D. +1.1 +0.3 +0.1 N.D.
carbon source carbon source Glycerol 108.6 mM N.D. +1.1 +0.2 +0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days N.D. +1.4 +0.6 +0.7 N.D.
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