Fitness for 5 genes in Pseudomonas putida KT2440

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 1005 experiments or choose conditions or try the comparative fitness browser

500 ntPP_2115 and PP_2116 are separated by 21 nucleotidesPP_2116 and PP_2117 are separated by 60 nucleotidesPP_2117 and PP_2118 are separated by 114 nucleotidesPP_2118 and PP_2119 are separated by 186 nucleotides PP_2115: PP_2115 - conserved protein of unknown function, at 2,414,803 to 2,415,000 _2115 PP_2116: PP_2116 - sulfurtransferase, at 2,415,022 to 2,415,264 _2116 PP_2117: PP_2117 - Erythronate-4-phosphate dehydrogenase, at 2,415,325 to 2,416,467 _2117 PP_2118: PP_2118 - conserved protein of unknown function, at 2,416,582 to 2,416,779 _2118 PP_2119: PP_2119 - putative ABC efflux transporter, permease/ATP-binding protein, at 2,416,966 to 2,418,729 _2119
Group Condition PP_2115 PP_2116 PP_2117 PP_2118 PP_2119
phage P. putida PUT 7 MOI 1 N.D. N.D. N.D. -2.4 +0.2
carbon source Trisodium citrate (C) N.D. N.D. N.D. -1.6 -0.4
nitrogen source 2,6-diaminopimelic (N) N.D. N.D. N.D. -1.8 -0.1
phage P. put South MOI 10 N.D. N.D. N.D. -1.5 -0.2
carbon source Lauric (C) N.D. N.D. N.D. -1.6 -0.0
temperature shift Temperature shift 30_to_25; with MOPS N.D. N.D. N.D. -1.3 -0.1
nitrogen source NAG (N); with MOPS N.D. N.D. N.D. -1.4 -0.1
pH Valerolactone (C) pH 6.5 N.D. N.D. N.D. -1.7 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. N.D. -1.4 +0.0
carbon source Delta-Decalactone (C) N.D. N.D. N.D. -1.2 -0.1
pH pH 4 N.D. N.D. N.D. -1.4 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs N.D. N.D. N.D. -1.3 +0.0
nitrogen source Propiolactam (N) N.D. N.D. N.D. -1.1 -0.1
carbon source Sebacic (C) N.D. N.D. N.D. -1.2 +0.1
carbon source D-Glucose (C) N.D. N.D. N.D. -1.2 +0.1
temperature shift Temperature shift 30_to_25 N.D. N.D. N.D. -1.1 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. N.D. -1.0 +0.1
carbon source D-Glucose (C) N.D. N.D. N.D. -1.1 +0.3
phage P. putida Sci small MOI 0.1 N.D. N.D. N.D. -0.9 +0.4
temperature shift Temperature shift 30_to_25; with MOPS N.D. N.D. N.D. -1.0 +0.4
nitrogen source Urea (N); with MOPS N.D. N.D. N.D. +0.6 -0.6
stress Growth with Chloride 500 mM; with MOPS N.D. N.D. N.D. +1.1 +0.1
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. N.D. N.D. +1.2 +0.0
carbon source carbon source 3-O-methyl-glucose 50 mM N.D. N.D. N.D. +1.0 +0.3
carbon source acetate (C) N.D. N.D. N.D. +1.2 +0.0
pH pH 6 N.D. N.D. N.D. +1.1 +0.2
carbon source carbon source Glycerol 108.6 mM N.D. N.D. N.D. +1.1 +0.2
carbon source carbon source 4-vinylphenol 0.1 mM N.D. N.D. N.D. +1.1 +0.2
pH pH 5 N.D. N.D. N.D. +1.1 +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days N.D. N.D. N.D. +1.4 +0.6
remove
PP_2115
plot		 remove
PP_2116
plot		 remove
PP_2117		 remove
PP_2118
plot		 remove
PP_2119
plot