Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2104	PP_2105	PP_2106	PP_2107	PP_2108
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.8	-1.0	-0.0	-2.3	-0.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.2	+0.5	+0.0	-4.2	-0.1
carbon source	Crotonic (C)	+0.3	-0.4	+0.2	-3.8	+0.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.1	-0.0	+0.0	-3.9	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	-0.4	-0.6	-2.9	-0.1
temperature shift	Temperature shift 30_to_10; with MOPS	+0.1	-0.9	+0.0	-2.0	-0.2
carbon source	D-Glucose (C)	-0.1	+0.4	-0.1	-2.5	-0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	-0.1	-0.2	-1.9	-0.4
nitrogen source	nitrate (N)	-0.0	-0.2	+0.1	-2.5	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.1	-0.2	+0.0	-2.3	-0.3
phage	P. putida South MOI 10	+0.1	+0.5	+0.2	-4.0	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.6	+1.0	+0.1	-2.5	-0.5
phage	P. putida Sci small MOI 0.1	+0.3	-1.0	+0.2	-0.9	-1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.4	+0.1	-0.4	-2.3	-0.2
nitrogen source	D-2-Aminobutyric (N)	+0.0	+0.5	-0.4	-2.3	-0.2
pH	Growth at pH9 and (C) Trisodium citrate	-0.3	+0.3	-0.2	-1.9	-0.1
nitrogen source	NAG (N); with MOPS	-0.0	-1.2	-0.6	-0.7	+0.4
carbon source	L-tyrosine 5 mM (C)	-0.3	+0.2	-0.0	-2.1	+0.1
stress	Growth with Chloride 200 mM	-0.3	+0.2	+0.3	-2.5	+0.2
carbon source	ferulate (C); with MOPS	-0.4	+0.2	+0.3	-1.9	-0.0
pH	pH 9	-0.2	+0.6	-0.1	-2.5	+0.6
carbon source	Myristic (C)	+0.4	+0.6	+0.0	-1.9	-0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	+0.5	+0.6	-2.4	+0.2
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	+0.3	-0.2	-1.6	-0.3
temperature shift	Temperature shift 10_to_30	-0.3	+0.3	+0.4	-1.6	-0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	-0.3	+0.4	-1.0	+1.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.4	-1.5	+0.3	+0.2	+0.6
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	+1.4	-0.6	-1.1	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.1	-0.3	-0.5	+1.7	+0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.3	+0.5	-0.2	+1.4	+0.4