Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2100	PP_2101	PP_2102	PP_2103	PP_2104
phage	P. putida PUT 7 MOI 1	-0.0	+0.5	-0.3	-4.4	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.3	-0.6	-0.1	-2.8	-0.3
pH	Growth at pH8 and (C) D-Glucose	-0.1	-1.2	-0.1	-0.2	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.2	-0.1	-0.6	-1.1	-0.0
carbon source	ferulate (C); with MOPS	+0.2	-0.5	-0.4	-0.9	-0.4
pH	Growth at pH7 and (C) Trisodium citrate	+0.1	-0.5	+0.4	-1.3	-0.4
temperature shift	Temperature shift 30_to_25; with MOPS	+0.1	-0.7	-0.1	-1.0	+0.1
nitrogen source	D-2-Aminobutyric (N)	-0.2	-0.1	-0.9	+0.5	-0.7
nitrogen source	2,6-diaminopimelic (N)	+0.3	+0.2	+0.2	-1.7	+0.0
nitrogen source	Propandiamine (N)	-0.0	+0.5	-0.1	-1.5	+0.3
phage	PUT 8 MOI 1	-0.2	-1.4	+0.0	+0.4	+0.2
phage	P. putida Sci Big MOI 0.1	-0.3	-1.2	-0.2	+1.0	-0.2
carbon source	carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM	+0.1	+0.4	-0.4	-1.1	+0.2
pH	pH 8	-0.1	+1.2	-0.2	-0.6	-0.2
phage	P. putida Sci small MOI 0.1	-0.2	+0.6	+0.3	-0.8	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.1	-0.6	-0.2	+1.4	+0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	+1.1	+0.3	-0.6	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	+1.0	+0.2	-0.5	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	+1.1	+0.1	+0.4	-0.5
carbon source	D-Glucose (C) with 20AA_mix_minus_Thr	-0.0	+0.5	+0.2	+0.9	-0.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	+2.1	-0.1	-0.5	-0.0
carbon source	Tween 20 (C)	+0.1	+1.7	-0.3	+0.4	-0.0
carbon source	L-Lysine (C)	+0.2	+1.3	+0.0	+0.6	-0.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	+2.3	+0.0	+0.1	-0.2
carbon source	Tween 20 (C)	-0.1	+1.7	+0.0	+0.9	-0.1
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	+2.5	+0.2	+0.2	-0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	+2.4	+0.1	+0.1	+0.0
carbon source	L-Leucine (C)	-0.2	+3.4	-0.0	+0.2	-0.3
carbon source	L-Leucine (C)	-0.0	+4.1	-0.3	+0.5	-0.5
carbon source	L-Leucine (C)	+0.1	+4.2	+0.0	+0.3	-0.2