Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2074	PP_2075	PP_2076	PP_2077	PP_2078
phage	P. putida Sci small MOI 0.1	-1.9	+0.6	+0.2	-0.5	-2.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-1.6	-1.2	-0.0	-1.1	+0.7
pH	Growth at pH7 and (C) Trisodium citrate	-0.3	-0.4	-0.8	-0.6	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.6	-0.0	-0.1	-1.2	-0.3
nitrogen source	2,6-diaminopimelic (N)	-0.7	-0.5	-0.6	+0.5	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-1.2	+0.1	-0.2	-1.0	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.8	+0.2	-0.3	-0.7	-0.2
stress	R2A with Fusaric 240 ug/mL	-0.5	+0.3	-0.2	-0.8	-0.7
pH	Growth at pH7 and (C) D-Glucose	-1.8	+0.2	+0.1	-0.3	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-1.2	+0.2	+0.1	-0.9	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-0.8	-0.3	-0.0	-0.9	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.6	-0.1	-0.5	-0.5	-0.9
carbon source	D-Glucose (C)	-0.4	-0.5	-0.2	+0.4	-0.6
biofilm mediium pdms	biofilm mediium PDMS; 5.5 hours	-0.6	+0.2	+0.5	-0.4	-0.6
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM	+0.0	-0.2	-0.2	+0.7	-1.1
nitrogen source	nitrogen source nitrite 1mM	-0.0	-0.7	-0.3	+0.8	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.6	-0.0	-0.4	-1.1	+0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-0.6	+0.2	-0.2	-0.6	+0.6
attachment on pdms	attachment on PDMS; 2 hours	-0.3	+0.3	+0.4	+0.4	-1.2
temperature	Growth at 30C; with MOPS	+0.6	+0.3	+0.1	-0.5	-0.8
temperature	Growth at 25C; with MOPS	-0.1	-0.7	+0.4	+0.6	-0.4
stress	Growth with Chloride 500 mM; with MOPS	+0.3	-0.5	-0.3	+0.9	-0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6	+0.7	+0.6	-0.2	-0.5
pH	Valerolactone (C) pH 6.5	-0.2	+0.6	+0.1	+0.6	-0.9
phage	PUT 8 MOI 1	+0.3	-0.2	+0.4	+0.5	-0.9
micoeukaryotes	Tetrahymena sp., Mixed culture-2	+0.5	+0.3	-0.4	-0.6	+1.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.8	+0.8	-0.1	-0.6	+0.0
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.9	-0.1	-0.7	+0.2	+0.8
pH	Growth at pH8 and (C) D-Glucose	+0.4	+0.5	-0.7	+0.7	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.2	+0.4	+0.5	-0.3	-0.2