Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2070	PP_2071	PP_2072	PP_2073	PP_2074
phage	P. putida Sci small MOI 0.1	-4.4	-2.6	-0.1	+1.2	-1.9
phage	P. putida Sci Big MOI 0.1	-1.6	-0.5	-0.1	-2.1	-0.1
pH	Growth at pH7 and (C) D-Glucose	-1.6	+0.5	-0.5	-0.2	-1.8
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-2.4	+0.1	+0.4	-2.5	+0.9
pH	Growth at pH8 and (C) D-Glucose	-2.4	-0.2	+0.2	-1.3	+0.4
carbon source	L-Phenylalanine 5 mM (C)	-2.4	-0.4	-0.2	-0.2	-0.1
carbon source	Trisodium citrate (C)	-0.9	-0.4	-0.4	-1.4	-0.1
carbon source	D-Glucose (C)	-1.7	-0.4	-0.2	-0.9	+0.2
nitrogen source	2,6-diaminopimelic (N)	-1.3	-0.7	+0.0	-0.2	-0.7
nitrogen source	nitrite (N)	-1.1	-0.2	+0.2	-1.2	-0.4
nitrogen source	no extra (N); with MOPS	-2.4	+0.1	-0.1	-0.6	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-1.5	+0.2	+0.1	-1.1	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.4	-0.3	+0.6	-0.9	-1.6
carbon source	ferulate (C); with MOPS	-1.9	+0.5	-0.3	+0.4	-1.0
pH	Growth at pH6 and (C) Trisodium citrate	+0.7	-0.3	-0.1	-2.1	-0.0
carbon source	carbon source D-Glucose 55.5 mM	-0.1	+0.0	+0.3	-2.4	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.8	+0.3	+0.0	-2.3	-0.6
pH	Growth at pH8 and (C) D-Glucose	-2.2	+0.1	-0.1	+0.5	+0.1
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-2.2	+0.4	+0.1	+0.6	-0.2
pH	Growth at pH6 and (C) Trisodium citrate	-1.7	-0.3	+0.3	+0.7	-0.3
temperature shift	Temperature shift 30_to_25; with MOPS	-1.7	-0.2	-0.3	+0.4	+0.6
stress	R2A with Polymyxin B sulfate 0.001 mg/ml	-1.1	+0.7	+0.2	-1.1	+0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+1.0	+0.4	+0.4	-1.4	-1.1
phage	P. putida South MOI 10	-1.7	+0.3	-0.2	+0.7	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.7	-0.4	-0.2	-1.0	+0.6
phage	PUT 8 MOI 1	+1.6	-0.2	+0.0	-1.5	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	+1.3	+0.3	+0.4	-0.2	-1.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+1.6	+0.1	-0.1	-0.3	+0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+2.1	+0.4	+0.3	+0.5	-1.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.3	+0.2	+0.2	+1.1	-0.5