Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_2050 and PP_2051 overlap by 4 nucleotidesPP_2051 and PP_2052 are separated by 79 nucleotidesPP_2052 and PP_5500 are separated by 79 nucleotidesPP_5500 and PP_2053 are separated by 113 nucleotides PP_2050: PP_2050 - conserved protein of unknown function, at 2,332,620 to 2,333,072 _2050 PP_2051: PP_2051 - 3-ketoacyl-CoA thiolase (thiolase I), at 2,333,069 to 2,334,253 _2051 PP_2052: PP_2052 - putative bifunctional enzyme: sugar-phosphatase/mannitol-1-phosphate 5-dehydrogenase, at 2,334,333 to 2,336,456 _2052 PP_5500: PP_5500 - protein of unknown function, at 2,336,536 to 2,336,739 _5500 PP_2053: PP_2053 - conserved protein of unknown function, at 2,336,853 to 2,337,149 _2053
Group Condition PP_2050 PP_2051 PP_2052 PP_5500 PP_2053
stress Growth with Chloride 500 mM; with MOPS -0.3 +0.4 -2.3 -4.3 -0.0
stress Growth with Chloride 500 mM +0.2 -0.1 -2.3 -3.7 -0.2
stress Growth with Chloride 500 mM +0.1 -0.2 -2.5 -3.0 -0.2
phage P. putida Missley MOI 0.1 -1.0 -0.1 -0.5 -3.0 -0.9
stress Growth with Chloride 500 mM; with MOPS +0.2 +0.0 -2.7 -2.7 -0.0
stress Growth with Chloride 500 mM; with MOPS -0.1 -0.3 -2.4 -2.1 -0.0
stress Growth with Chloride 500 mM; with MOPS +0.0 +0.1 -2.5 -2.4 +0.3
phage PUT 8 MOI 1 -0.1 -0.3 -0.1 -3.7 +0.0
stress Growth with Chloride 500 mM; with MOPS -0.1 +0.1 -2.5 -1.8 +0.1
stress Growth with Chloride 500 mM +0.1 -0.2 -1.9 -1.8 -0.1
phage P. putida PUT 7 MOI 1 -0.9 -0.9 -0.9 -0.3 -0.7
stress Growth with Chloride 500 mM; with MOPS +0.2 -0.0 -2.3 -1.3 -0.1
nitrogen source 2,6-diaminopimelic (N) -0.6 -0.5 +0.1 -1.4 -0.3
nitrogen source D-2-Aminobutyric (N) -0.6 +0.3 -0.0 -2.0 -0.2
phage P. putida Sci small MOI 0.1 -0.6 -0.1 -0.2 -1.5 -0.1
nitrogen source D-2-Aminobutyric (N) -0.3 -0.5 +0.0 -0.4 -1.3
nitrogen source NAG (N); with MOPS +0.0 -0.2 +0.4 -1.8 -0.8
carbon source D-Glucose (C) +0.2 +0.1 +0.0 -1.9 -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.3 +0.4 -0.2 -2.3 -0.2
phage P. putida Sci Big MOI 0.1 -0.7 -0.4 -0.4 +0.5 -0.8
temperature shift Temperature shift 30_to_25; with MOPS +0.2 +0.2 +0.1 -1.7 -0.1
nitrogen source nitrite (N) +0.4 -0.2 +0.2 -1.4 -0.2
carbon source ferulate (C); with MOPS +0.0 -0.3 +0.4 -1.8 +0.5
carbon source Myristic (C) -1.0 +0.5 -0.3 +0.4 -0.3
nitrogen source NAG (N); with MOPS +0.2 -0.2 +0.3 -1.4 +0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.1 +0.3 +0.3 +0.6 -1.2
temperature Growth at 25C -0.5 -0.4 +0.6 +0.5 +0.4
pH Growth at pH7 and (C) Trisodium citrate +0.2 +0.3 -0.5 +0.6 +0.8
carbon source 4-Aminobutyric 10 mM (C) -0.3 -0.0 -0.0 +1.7 +0.5
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 -0.1 +0.3 +1.9 +0.1
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