Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2045	PP_2046	PP_2047	PP_2048	PP_2049
carbon source	1,4-Butanediol (C)	+0.6	-1.6	-4.1	+1.9	-7.3
carbon source	1,4-Butanediol (C)	+0.4	-1.1	-2.7	+1.3	-4.2
phage	P. putida Sci small MOI 0.1	-0.4	-0.0	-0.6	-0.1	-1.1
carbon source	Decanoic (C)	-0.1	-0.9	-0.7	-0.2	-0.2
carbon source	3-Hydroxydecanoic (C)	-0.1	-1.2	-1.1	+0.2	+0.2
micoeukaryotes	Acanthamoeba sp., muxed culture-2	-0.0	-1.6	-0.0	+0.1	-0.4
temperature shift	Temperature shift 10_to_30; with MOPS	-0.0	-1.2	-0.2	+0.0	-0.5
nitrogen source	NAG (N); with MOPS	+0.1	-1.6	-0.4	+0.0	-0.1
phage	P. putida PUT 7 MOI 1	-0.5	-0.9	-0.3	+0.0	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.0	-1.7	+0.2	+0.1	-0.4
pH	pH 7	+0.2	-1.6	-0.2	-0.0	-0.0
pH	Growth at pH6 and (C) D-Glucose	+0.0	+0.4	-0.1	-0.4	-1.5
pH	Growth at pH7 and (C) D-Glucose	-0.4	-1.2	+0.1	-0.1	+0.3
phage	P. put South MOI 10	-0.0	-1.1	+0.2	-0.5	+0.2
phage	P. putida Sci Big MOI 0.1	-0.5	+0.2	-1.3	-0.0	+0.5
carbon source	ferulate (C); with MOPS	-0.6	-1.0	+0.3	-0.0	+0.4
carbon source	carbon source Glycerol 108.6 mM	+0.1	-1.0	-0.3	+0.2	+0.3
phage	P. putida Sci small MOI 0.1	-0.6	+0.9	-1.0	+0.5	-0.5
pH	Growth at pH6 and (C) D-Glucose	+0.0	+0.5	-0.5	-0.6	+0.4
phage	PUT 8 MOI 1	-0.4	+0.8	-0.4	+0.2	+0.1
temperature shift	Temperature shift 30_to_21; with MOPS	-0.3	+0.9	+0.5	+0.0	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.1	+0.8	-0.5	+0.1	+0.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	+1.3	-0.3	+0.3	+0.1
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.0	+1.6	+0.1	-0.1	-0.4
carbon source	D-Glucose (C); with MOPS	+0.1	+0.9	+0.3	-0.4	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	+1.2	+0.1	+0.2	+0.5
carbon source	4-Hydroxyvalerate (C) (40mM)	-0.1	+1.1	+0.7	+0.6	+0.1
carbon source	4-Hydroxyvalerate (C) (40mM)	-0.1	+1.4	+0.6	+0.7	+0.1
carbon source	1,3-Hexanediol (C)	-0.1	+6.7	+6.9	+0.8	-0.4
carbon source	1,3-Hexanediol (C)	-0.2	+7.4	+7.1	+1.0	-0.5