Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_2019 and PP_2020 are separated by 0 nucleotidesPP_2020 and PP_2021 overlap by 35 nucleotidesPP_2021 and PP_5496 are separated by 122 nucleotidesPP_5496 and PP_2023 are separated by 132 nucleotides PP_2019: PP_2019 - adhesin-associated MmpL efflux pump (from data), at 2,291,606 to 2,294,005 _2019 PP_2020: PP_2020 - putative Lipoprotein, at 2,294,006 to 2,294,359 _2020 PP_2021: PP_2021 - L-alpha-hydroxyglutaric acid gamma-lactonase, at 2,294,325 to 2,295,455 _2021 PP_5496: PP_5496 - conserved exported protein of unknown function, at 2,295,578 to 2,295,754 _5496 PP_2023: PP_2023 - Glutathione S-transferase family protein, at 2,295,887 to 2,296,486 _2023
Group Condition PP_2019 PP_2020 PP_2021 PP_5496 PP_2023
carbon source Delta-Dodecalactone (C) -5.0 -0.1 -0.2 -0.4 -0.2
carbon source Delta-Undecalactone (C) -4.0 -0.2 -0.2 -0.0 -0.7
carbon source Delta-Dodecalactone (C) -4.5 +0.1 -0.0 -0.2 -0.0
carbon source Delta-Undecalactone (C) -3.8 -0.2 -0.1 -0.3 +0.1
phage P. putida Missley MOI 0.1 -0.3 -1.1 -0.5 -1.0 -0.8
carbon source Tween 20 (C) -4.5 +0.6 -0.2 +0.4 +0.3
carbon source Butyl stearate (C) -3.3 +0.0 -0.1 +0.1 +0.1
pH Growth at pH9 and (C) Trisodium citrate -0.4 -0.4 -0.2 -0.6 -1.4
carbon source ferulate (C); with MOPS -1.1 -0.1 -0.2 -1.0 -0.3
phage P. putida Sci Big MOI 0.1 -0.0 -0.2 -0.5 -1.2 -0.7
phage P. putida PUT 7 MOI 1 -0.4 -1.0 -0.5 -1.0 +0.2
carbon source Delta-Nonalactone (C) -1.8 -0.3 -0.0 -0.5 +0.0
carbon source ferulate (C); with MOPS -0.9 -0.5 -0.0 -0.8 -0.3
carbon source Delta-Decalactone (C) -1.9 -0.4 -0.0 +0.1 -0.1
carbon source Delta-Decalactone (C) -2.3 +0.0 -0.2 +0.1 +0.1
nitrogen source nitrite (N) -0.5 -0.1 -0.2 -1.6 +0.0
phage P. putida Sci small MOI 0.1 -0.1 -0.5 -0.6 -1.3 +0.4
carbon source Tween 20 (C) -3.4 +0.3 +0.3 -0.1 +0.6
carbon source Myristic (C) +0.0 +0.3 -0.3 -1.1 -0.9
nitrogen source Propandiamine (N) -0.6 -0.2 -0.1 +0.4 -1.1
stress Growth with Chloride 200 mM; with MOPS -0.2 -0.7 -0.4 -0.8 +0.7
carbon source Butyl stearate (C) -1.9 +0.0 +0.0 +0.3 +0.3
nitrogen source Propiolactam (N) -0.2 +0.5 -0.2 -0.2 -1.2
carbon source carbon source 4-vinylphenol 0.1 mM -0.3 +0.2 +0.2 -1.5 +0.2
nitrogen source D-2-Aminobutyric (N) +1.3 -0.1 -0.9 +0.3 -1.4
pH pH 9 -0.1 -0.5 -0.3 -0.8 +0.9
carbon source carbon source 2-Deoxy-D-glucose 100 mM -0.1 -0.2 -0.1 -1.2 +0.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs +0.2 +0.5 -0.2 -1.1 +0.5
nitrogen source D-2-Aminobutyric (N) +1.1 -0.3 -0.5 +0.2 -0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 +0.2 -0.2 +1.1 -0.8
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