Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_2014 and PP_2015 are separated by 13 nucleotidesPP_2015 and PP_2016 overlap by 4 nucleotidesPP_2016 and PP_2017 are separated by 13 nucleotidesPP_2017 and PP_2018 are separated by 274 nucleotides PP_2014: PP_2014 - conserved membrane protein of unknown function, at 2,285,716 to 2,286,603 _2014 PP_2015: PP_2015 - conserved protein of unknown function, at 2,286,617 to 2,286,877 _2015 PP_2016: PP_2016 - conserved protein of unknown function, at 2,286,874 to 2,287,704 _2016 PP_2017: PP_2017 - aminopeptidase N, at 2,287,718 to 2,290,375 _2017 PP_2018: PP_2018 - adhesin-associated BNR repeat protein (from data), at 2,290,650 to 2,291,609 _2018
Group Condition PP_2014 PP_2015 PP_2016 PP_2017 PP_2018
carbon source Tween 20 (C) -0.2 N.D. -0.9 +0.1 -5.1
carbon source Delta-Dodecalactone (C) -0.1 N.D. -0.5 -0.1 -4.5
phage P. putida PUT 7 MOI 1 -0.8 N.D. -2.3 -0.7 -0.9
carbon source Delta-Dodecalactone (C) +0.0 N.D. +0.2 -0.1 -4.2
carbon source Butyl stearate (C) +0.1 N.D. -0.5 -0.1 -3.5
carbon source Tween 20 (C) -0.1 N.D. +0.4 -0.2 -4.0
carbon source Delta-Undecalactone (C) -0.1 N.D. -0.4 +0.2 -3.4
carbon source Delta-Undecalactone (C) -0.2 N.D. -0.1 +0.2 -3.3
carbon source carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM -0.2 N.D. -1.9 -0.7 -0.4
carbon source 3-methyl-1-butanol 0.25 vol% (C) -1.0 N.D. -1.5 -0.2 -0.4
carbon source ferulate (C); with MOPS -0.2 N.D. -0.8 -0.2 -1.5
carbon source Butyl stearate (C) -0.0 N.D. -0.1 -0.0 -2.6
micoeukaryotes Tetrahymena sp., Mixed culture-2 -0.4 N.D. +0.2 -0.2 -2.3
carbon source carbon source 2-Deoxy-D-glucose 50 mM +0.3 N.D. -2.0 -0.3 -0.1
carbon source carbon source D-Glucose 55.5 mM -0.4 N.D. -1.5 -0.3 +0.1
carbon source Delta-Nonalactone (C) -0.2 N.D. -0.1 +0.9 -2.7
carbon source carbon source Bisabolene 48.9 mM -0.3 N.D. -1.0 -0.3 -0.5
carbon source carbon source 2-Deoxy-D-glucose 100 mM +0.0 N.D. -1.0 -0.1 -0.9
pH pH 5 -0.1 N.D. -0.5 -0.3 -1.1
r2a control with 0.2% methanol R2A control with 0.2% methanol +0.2 N.D. -1.4 -0.0 -0.5
nitrogen source Propandiamine (N) -0.8 N.D. +0.3 -0.3 -0.9
carbon source ferulate (C); with MOPS +0.2 N.D. -1.2 +0.1 -0.6
carbon source Delta-Decalactone (C) -0.1 N.D. +0.1 +0.6 -1.9
carbon source 3-Hydroxydecanoic (C) +0.2 N.D. +0.1 +0.2 -1.7
temperature shift Temperature shift 30_to_4 -0.3 N.D. -1.0 -0.3 +0.4
carbon source Delta-Decalactone (C) -0.1 N.D. +0.7 +0.8 -2.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 N.D. -1.0 -0.2 +1.2
nitrogen source D-2-Aminobutyric (N) +0.3 N.D. -1.1 +0.2 +0.8
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.7 N.D. +0.6 -0.1 -0.8
nitrogen source D-2-Aminobutyric (N) +0.2 N.D. -0.6 +0.2 +1.5
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