Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2008	PP_2009	PP_2010	PP_2011	PP_2012
phage	P. putida Sci small MOI 0.1	-0.1	-1.6	-0.2	+0.1	N.D.
nitrogen source	2,6-diaminopimelic (N)	-0.3	-0.3	-0.1	-0.9	N.D.
phage	P. putida PUT 7 MOI 1	-0.1	-1.3	+0.0	-0.2	N.D.
phage	P. putida Sci small MOI 0.1	-0.4	-0.9	+0.1	-0.2	N.D.
stress	R2A with Fusaric 240 ug/mL	-0.3	-0.4	-0.7	-0.1	N.D.
temperature	Growth at 30C; with MOPS	-0.0	-0.5	+0.1	-0.6	N.D.
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.3	+0.2	+0.2	-0.9	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	+0.2	-0.3	-0.2	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	-0.5	+0.4	-0.1	N.D.
carbon source	Valerolactone (C)	-0.4	-0.6	+0.3	+0.0	N.D.
dilutelb	LB 0.1x with 55.5 mM D-Glucose	+0.2	+0.2	-0.6	-0.4	N.D.
reactor	40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO.	+0.0	-0.5	+0.4	-0.5	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	-0.6	+0.3	-0.6	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+0.2	-0.1	+0.2	-0.7	N.D.
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	+0.1	+0.6	-0.5	N.D.
stress	1-Pentanol 0.3 vol%	+0.2	-0.2	-0.5	+0.4	N.D.
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.0	+0.5	-0.8	+0.2	N.D.
nitrogen source	Propandiamine (N)	+0.1	+0.5	-0.7	+0.1	N.D.
biofilm mediium pdms	biofilm mediium PDMS; 8 hours	+0.2	+0.3	+0.1	-0.6	N.D.
carbon source	D-Glucose (C)	+0.2	-0.6	+0.0	+0.4	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	+0.1	+1.1	-0.8	N.D.
pH	pH 6	-0.1	+0.8	-0.6	+0.4	N.D.
carbon source	carbon source 2-Deoxy-D-glucose 100 mM	+0.2	+0.5	-0.4	+0.2	N.D.
temperature shift	Temperature shift 30_to_25; with MOPS	+0.2	+0.6	+0.1	-0.4	N.D.
carbon source	carbon source 2-Deoxy-D-glucose 50 mM	+0.1	+0.3	-0.3	+0.5	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	+0.2	-0.1	+0.8	N.D.
carbon source	L-Leucine (C)	-0.2	+0.7	+0.1	+0.4	N.D.
carbon source	carbon source 4-vinylphenol 0.1 mM	-0.1	+0.3	+0.4	+0.4	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	+0.4	+0.2	+0.5	N.D.
pH	Valerolactone (C) pH 6.5	+0.3	+0.7	-0.1	+0.3	N.D.