Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2007	PP_2008	PP_2009	PP_2010	PP_2011
phage	P. putida Sci small MOI 0.1	-0.2	-0.1	-1.6	-0.2	+0.1
nitrogen source	2,6-diaminopimelic (N)	-0.1	-0.3	-0.3	-0.1	-0.9
phage	P. putida PUT 7 MOI 1	-0.2	-0.1	-1.3	+0.0	-0.2
phage	P. putida Sci small MOI 0.1	-0.2	-0.4	-0.9	+0.1	-0.2
stress	R2A with Fusaric 240 ug/mL	-0.1	-0.3	-0.4	-0.7	-0.1
phage	P. put South MOI 10	-0.3	-0.4	-0.2	-0.3	+0.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.1	-0.3	+0.2	+0.2	-0.9
carbon source	Valerolactone (C)	+0.0	-0.4	-0.6	+0.3	+0.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	-0.4	+0.2	-0.3	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.1	+0.2	-0.1	+0.2	-0.7
pH	Growth at pH7 and (C) D-Glucose	-0.2	+0.3	-0.5	+0.2	-0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	-0.5	-0.5	+0.4	-0.1
reactor	40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO.	+0.1	+0.0	-0.5	+0.4	-0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+0.4	-0.6	+0.3	-0.6
dilutelb	LB 0.1x with 55.5 mM D-Glucose	+0.3	+0.2	+0.2	-0.6	-0.4
micoeukaryotes	Acanthamoeba sp., muxed culture-2	+0.3	-0.2	+0.2	-0.3	-0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	-0.3	-0.3	+0.3	-0.2
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	-0.0	+0.5	-0.8	+0.2
stress	MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL	-0.3	-0.2	+0.3	-0.3	+0.3
stress	1-Pentanol 0.3 vol%	+0.1	+0.2	-0.2	-0.5	+0.4
carbon source	D-Glucose (C)	-0.1	+0.2	-0.6	+0.0	+0.4
nitrogen source	Propandiamine (N)	+0.0	+0.1	+0.5	-0.7	+0.1
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	-0.5	+0.1	+0.6	-0.5
carbon source	ferulate (C); with MOPS	-0.3	+0.2	+0.3	+0.2	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	-0.1	+0.1	+1.1	-0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.3	+0.2	-0.2	+0.4	-0.4
pH	pH 6	+0.0	-0.1	+0.8	-0.6	+0.4
temperature shift	Temperature shift 30_to_25; with MOPS	+0.0	+0.2	+0.6	+0.1	-0.4
pH	Valerolactone (C) pH 6.5	+0.2	+0.3	+0.7	-0.1	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	-0.2	+0.4	+0.2	+0.5