Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_1994 and PP_1995 are separated by 61 nucleotidesPP_1995 and PP_1996 are separated by 222 nucleotidesPP_1996 and PP_1997 overlap by 4 nucleotidesPP_1997 and PP_1998 overlap by 17 nucleotides PP_1994: PP_1994 - tRNA pseudouridine (38-40)synthase, at 2,262,286 to 2,263,146 _1994 PP_1995: PP_1995 - N-(5'-phosphoribosyl)anthranilate isomerase, at 2,263,208 to 2,263,828 _1995 PP_1996: PP_1996 - acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, at 2,264,051 to 2,264,944 _1996 PP_1997: PP_1997 - folypolyglutamate synthase/dihydrofolate synthase, at 2,264,941 to 2,266,251 _1997 PP_1998: PP_1998 - putative cell division protein, at 2,266,235 to 2,266,879 _1998
Group Condition PP_1994 PP_1995 PP_1996 PP_1997 PP_1998
carbon source benzoic (C) -2.7 -6.8 N.D. N.D. +0.3
nitrogen source 4-aminobutyric (N) -1.9 -6.8 N.D. N.D. -0.2
carbon source 4-Methyl-2-oxopentanoic (C) -2.7 -6.0 N.D. N.D. -0.0
nitrogen source nitrite (N) -1.9 -6.8 N.D. N.D. +0.1
carbon source 1,2-Propanediol (C) -2.3 -6.4 N.D. N.D. -0.0
stress MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL -2.6 -6.2 N.D. N.D. +0.2
carbon source Hydroxy-L-Proline (C) -2.6 -6.1 N.D. N.D. +0.1
carbon source Vanillin (C) -1.8 -6.3 N.D. N.D. -0.3
carbon source Glycerol (C) -2.6 -6.1 N.D. N.D. +0.2
carbon source 3-Hydroxypropionate (C) -2.8 -5.7 N.D. N.D. -0.0
carbon source Protocatechuic Acid (C) -1.8 -6.6 N.D. N.D. -0.1
nitrogen source D-2-Aminobutyric (N) -2.1 -5.8 N.D. N.D. -0.5
nitrogen source nitrite (N) -1.3 -7.0 N.D. N.D. -0.1
carbon source 4-Methyl-2-oxopentanoic (C) -1.9 -6.3 N.D. N.D. -0.1
nitrogen source nitrogen source nitrate 5mM -5.0 -2.8 N.D. N.D. -0.4
pH Growth at pH6 and (C) Trisodium citrate -3.4 -4.7 N.D. N.D. +0.0
carbon source Protocatechuic Acid (C) -2.5 -5.6 N.D. N.D. -0.1
carbon source Delta-Decalactone (C) -2.0 -5.3 N.D. N.D. -0.8
carbon source Protocatechuic Acid (C) -2.5 -5.8 N.D. N.D. +0.1
nitrogen source L-Lysine (N) -1.2 -7.0 N.D. N.D. +0.1
carbon source Phenylacetic (C) -1.7 -6.5 N.D. N.D. +0.2
carbon source Hydroxy-L-Proline (C) -1.7 -6.2 N.D. N.D. -0.1
carbon source Glycerol (C) -1.7 -6.6 N.D. N.D. +0.3
micoeukaryotes Tetrahymena sp., Mixed culture-1 -4.6 -3.6 N.D. N.D. +0.3
carbon source Protocatechuic Acid (C) -1.8 -6.2 N.D. N.D. +0.2
carbon source Vanillic Acid (C) -1.7 -6.4 N.D. N.D. +0.4
nitrogen source nitrate (N) -3.4 -4.7 N.D. N.D. +0.4
carbon source DL-3-Hydroxyisobutyric (C) -1.6 -6.2 N.D. N.D. +0.3
pH D-Glucose (C) pH 6 -1.4 -6.2 N.D. N.D. +0.5
carbon source ferulate (C); with MOPS -2.6 -4.7 N.D. N.D. +0.9
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