Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_1990 and PP_1992 are separated by 391 nucleotidesPP_1992 and PP_1993 are separated by 71 nucleotidesPP_1993 and PP_1994 are separated by 137 nucleotidesPP_1994 and PP_1995 are separated by 61 nucleotides PP_1990: PP_1990 - transposase, at 2,256,644 to 2,257,945 _1990 PP_1992: PP_1992 - aspartate-semialdehyde dehydrogenase, at 2,258,337 to 2,259,341 _1992 PP_1993: PP_1993 - putative motility protein fimV, at 2,259,413 to 2,262,148 _1993 PP_1994: PP_1994 - tRNA pseudouridine (38-40)synthase, at 2,262,286 to 2,263,146 _1994 PP_1995: PP_1995 - N-(5'-phosphoribosyl)anthranilate isomerase, at 2,263,208 to 2,263,828 _1995
Group Condition PP_1990 PP_1992 PP_1993 PP_1994 PP_1995
carbon source benzoic (C) N.D. -0.2 -0.7 -2.7 -6.8
carbon source Protocatechuic Acid (C) N.D. -0.3 -0.7 -1.8 -6.6
carbon source 4-Methyl-2-oxopentanoic (C) N.D. -0.1 -0.4 -2.7 -6.0
carbon source Hydroxy-L-Proline (C) N.D. -0.0 -0.4 -2.6 -6.1
carbon source 1,2-Propanediol (C) N.D. +0.1 -0.5 -2.3 -6.4
micoeukaryotes Tetrahymena sp., Mixed culture-1 N.D. -0.3 -0.6 -4.6 -3.6
nitrogen source nitrite (N) N.D. -0.0 -0.2 -1.9 -6.8
carbon source Protocatechuic Acid (C) N.D. +0.0 -0.7 -2.5 -5.8
carbon source Phenylacetic (C) N.D. -0.2 -0.5 -1.7 -6.5
carbon source Vanillin (C) N.D. -0.2 -0.5 -1.8 -6.3
carbon source Protocatechuic Acid (C) N.D. -0.0 -0.8 -2.5 -5.6
carbon source 4-Methyl-2-oxopentanoic (C) N.D. +0.0 -0.6 -1.9 -6.3
nitrogen source 4-aminobutyric (N) N.D. +0.0 -0.0 -1.9 -6.8
carbon source Protocatechuic Acid (C) N.D. -0.1 -0.6 -1.8 -6.2
pH Growth at pH6 and (C) Trisodium citrate N.D. +0.2 -0.6 -3.4 -4.7
carbon source Glycerol (C) N.D. +0.1 -0.1 -2.6 -6.1
stress MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL N.D. +0.2 +0.1 -2.6 -6.2
carbon source 4-Hydroxybenzoic Acid (C) N.D. +0.0 -0.6 -2.0 -5.9
nitrogen source D-2-Aminobutyric (N) N.D. -0.7 -0.1 -2.0 -5.7
nitrogen source nitrite (N) N.D. -0.1 -0.0 -1.3 -7.0
carbon source 3-Hydroxypropionate (C) N.D. +0.0 -0.0 -2.8 -5.7
carbon source L-Lysine (C) N.D. -0.1 -0.4 -1.9 -6.0
carbon source Vanillic Acid (C) N.D. +0.2 -0.3 -1.7 -6.4
carbon source Phenylacetic (C) N.D. +0.0 -0.4 -1.5 -6.4
carbon source Hydroxy-L-Proline (C) N.D. -0.0 -0.3 -1.7 -6.2
nitrogen source L-Lysine (N) N.D. +0.0 -0.0 -1.2 -7.0
carbon source Glycerol (C) N.D. +0.4 -0.2 -1.7 -6.6
nitrogen source nitrate (N) N.D. +0.2 -0.2 -3.4 -4.7
nitrogen source NAG (N) N.D. +0.1 -0.4 -3.4 -4.3
nitrogen source D-2-Aminobutyric (N) N.D. +0.2 -0.2 -2.1 -5.8
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