Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_1983 and PP_1984 are separated by 61 nucleotidesPP_1984 and PP_1985 are separated by 131 nucleotidesPP_1985 and PP_1986 overlap by 4 nucleotidesPP_1986 and PP_1987 are separated by 118 nucleotides PP_1983: PP_1983 - PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase, at 2,246,302 to 2,249,598 _1983 PP_1984: PP_1984 - Transcriptional regulator, LysR family, at 2,249,660 to 2,250,538 _1984 PP_1985: PP_1985 - 3-isopropylmalate dehydratase large subunit, at 2,250,670 to 2,252,103 _1985 PP_1986: PP_1986 - 3-isopropylmalate dehydratase small subunit, at 2,252,100 to 2,252,744 _1986 PP_1987: PP_1987 - Methlytransferase, UbiE/COQ5 family, at 2,252,863 to 2,253,627 _1987
Group Condition PP_1983 PP_1984 PP_1985 PP_1986 PP_1987
carbon source 3-Hydroxypropionate (C) -0.1 -3.3 -5.6 -6.8 +0.0
pH Growth at pH6 and (C) D-Glucose +0.1 -0.1 -4.3 -5.9 -5.2
carbon source L-Lysine (C) -0.1 +0.0 -7.9 -6.7 -0.3
carbon source p-Coumaric (C) -0.2 +0.0 -7.7 -6.5 -0.5
carbon source Hydroxy-L-Proline (C) -0.1 +0.1 -7.9 -6.6 -0.4
carbon source Beta-alanine (C) -0.0 -1.6 -6.7 -6.6 +0.3
carbon source Protocatechuic Acid (C) -0.2 +0.3 -7.8 -6.6 -0.3
carbon source 4-Hydroxybenzoic Acid (C) -0.2 +0.3 -7.1 -6.6 -0.8
carbon source Ferulic Acid (C) -0.1 +0.1 -7.8 -6.6 +0.0
carbon source Protocatechuic Acid (C) -0.1 -0.0 -7.7 -6.4 -0.0
carbon source 3-methyl-1-butanol 0.1 vol% (C) +0.1 -1.4 -6.9 -6.2 +0.2
nitrogen source L-Ornithine (N) -0.0 -0.1 -7.1 -6.6 -0.3
carbon source 1,2-Propanediol (C) -0.1 +0.1 -7.3 -6.7 +0.1
carbon source Vanillin (C) +0.0 +0.3 -7.7 -6.5 -0.1
carbon source Ferulic Acid (C) -0.1 +0.1 -7.7 -6.5 +0.3
carbon source Phenylacetic (C) +0.0 +0.1 -7.1 -6.5 -0.4
carbon source 1,4-Butanediol (C) +0.1 +0.0 -7.4 -6.1 -0.4
nitrogen source L-Histidine (N) -0.0 -0.0 -6.7 -6.7 -0.2
nitrogen source Valerolactam (N) +0.1 +0.1 -7.3 -6.7 +0.1
carbon source Hydroxy-L-Proline (C) -0.1 -0.1 -6.5 -6.7 -0.2
stress Growth with Chloride 500 mM; with MOPS -0.0 +0.3 -6.7 -6.1 -0.8
carbon source benzoic (C) -0.3 +0.1 -8.1 -4.8 -0.3
carbon source Glycerol (C) -0.0 +0.1 -7.1 -6.6 +0.4
nitrogen source Valerolactam (N) +0.2 -0.1 -6.5 -6.5 -0.3
carbon source 3-methyl-3-buten-1-ol 0.25 vol% (C) +0.0 -0.2 -7.1 -6.4 +0.4
carbon source Trisodium citrate (C) +0.2 +0.3 -6.6 -6.0 -1.0
carbon source Delta-Undecalactone (C) +0.1 +0.5 -7.0 -6.5 -0.2
nitrogen source 5-Aminovaleric (N) -0.0 -0.0 -6.6 -6.7 +0.3
nitrogen source nitrogen source Ammonium chloride 20mM -0.0 +0.1 -6.5 -6.9 +0.5
carbon source Myristic (C) +0.3 +0.1 -7.2 -6.1 +0.6
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