Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_1961 and PP_1962 overlap by 1 nucleotidesPP_1962 and PP_1963 are separated by 82 nucleotidesPP_1963 and PP_1964 overlap by 35 nucleotidesPP_1964 and PP_1966 are separated by 446 nucleotides PP_1961: PP_1961 - conserved protein of unknown function, at 2,221,629 to 2,222,618 _1961 PP_1962: PP_1962 - Site-specific recombinase, phage integrase family, at 2,222,618 to 2,224,546 _1962 PP_1963: PP_1963 - conserved protein of unknown function, at 2,224,629 to 2,226,632 _1963 PP_1964: PP_1964 - putative dGMP, dTMP, dhydroxyCMP kinase, at 2,226,598 to 2,227,401 _1964 PP_1966: PP_1966 - DNA polymerase III subunit delta', at 2,227,848 to 2,228,834 _1966
Group Condition PP_1961 PP_1962 PP_1963 PP_1964 PP_1966
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.5 -0.5 -1.6 N.D. N.D.
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.9 -0.2 -0.8 N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.6 -0.3 -1.0 N.D. N.D.
micoeukaryotes Tetrahymena sp., Mixed culture-1 -0.6 -0.5 -0.3 N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.6 -0.4 -0.4 N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.5 -0.3 -0.6 N.D. N.D.
pH Growth at pH6 and (C) D-Glucose -0.6 +0.2 -1.0 N.D. N.D.
carbon source D-Glucose (C) -0.4 -0.2 -0.7 N.D. N.D.
micoeukaryotes C.elegans, mixed culture-2 -0.5 +0.1 -0.7 N.D. N.D.
nitrogen source nitrate (N) -0.7 +0.4 -0.4 N.D. N.D.
pH Valerolactone (C) pH 6.5 -0.2 -0.8 +0.4 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +0.4 -1.1 N.D. N.D.
temperature Growth at 25C +0.6 +0.1 -1.0 N.D. N.D.
nitrogen source D-2-Aminobutyric (N) +0.2 +0.7 -0.9 N.D. N.D.
nitrogen source no extra (N); with MOPS +0.6 +0.1 -0.7 N.D. N.D.
carbon source acetate (C) -0.4 +0.2 +0.7 N.D. N.D.
phage P. put South MOI 10 +0.9 +0.5 -0.2 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 +0.6 +0.2 N.D. N.D.
phage P. putida South MOI 10 +0.6 +0.5 +0.2 N.D. N.D.
nitrogen source Urea (N); with MOPS +0.5 +0.2 +0.8 N.D. N.D.
carbon source carbon source 2-Deoxy-D-glucose 100 mM +0.6 +0.2 +0.7 N.D. N.D.
carbon source carbon source 3-O-methyl-glucose 50 mM +0.5 +0.2 +0.8 N.D. N.D.
phage P. putida Sci Big MOI 0.1 +0.4 +0.8 +0.4 N.D. N.D.
phage P. putida Sci small MOI 0.1 +0.7 +0.4 +0.7 N.D. N.D.
phage PUT8 MOI 10 +0.5 +0.3 +0.9 N.D. N.D.
phage P. putida PUT 7 MOI 1 +0.4 +1.0 +0.5 N.D. N.D.
phage PUT8 MOI 0.1 +0.5 +0.6 +0.9 N.D. N.D.
phage PUT8 MOI 0.1 +1.0 +0.5 +0.6 N.D. N.D.
phage P. putida Missley MOI 0.1 +0.4 +0.8 +1.0 N.D. N.D.
phage P. putida Sci small MOI 0.1 +1.0 +0.9 +0.6 N.D. N.D.
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