Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_1949 and PP_1950 are separated by 93 nucleotidesPP_1950 and PP_1951 are separated by 40 nucleotidesPP_1951 and PP_1952 are separated by 68 nucleotidesPP_1952 and PP_1953 are separated by 123 nucleotides PP_1949: PP_1949 - Oxidoreductase, GMC family, at 2,204,824 to 2,206,476 _1949 PP_1950: PP_1950 - conserved protein of unknown function, at 2,206,570 to 2,207,748 _1950 PP_1951: PP_1951 - Oxidoreductase, short chain dehydrogenase/reductase family, at 2,207,789 to 2,208,616 _1951 PP_1952: PP_1952 - Metallo-beta-lactamase family protein, at 2,208,685 to 2,209,632 _1952 PP_1953: PP_1953 - Oxidoreductase, short chain dehydrogenase/reductase family, at 2,209,756 to 2,210,565 _1953
Group Condition PP_1949 PP_1950 PP_1951 PP_1952 PP_1953
carbon source carbon source D-Glucose 55.5 mM -0.2 -0.1 -0.5 -0.3 -0.9
carbon source L-Alanine (C) +0.1 -0.4 -0.5 -0.2 -0.5
pH pH 8 -0.2 -0.5 -0.3 -0.4 -0.1
carbon source carbon source 2-Deoxy-D-glucose 100 mM -0.1 -0.4 -0.3 -0.2 -0.3
pH pH 7 -0.1 -0.3 -0.4 -0.4 -0.2
stress R2A with Polymyxin B sulfate 0.001 mg/ml -0.2 -0.2 -0.5 -0.0 -0.4
pH Growth at pH6 and (C) D-Glucose -0.2 -0.4 -0.2 -0.2 -0.4
carbon source carbon source 4-vinylphenol 0.01 mM -0.3 -0.1 +0.1 -0.3 -0.5
nitrogen source Ammonium chloride (N); with MOPS +0.1 -0.1 -0.6 -0.4 -0.0
carbon source L-Leucine (C) -0.2 -0.4 -0.0 -0.4 +0.2
nitrogen source D-2-Aminobutyric (N) +0.3 -0.6 -0.2 -0.1 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.0 -0.8 -0.1 +0.2 +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.1 -0.5 +0.4 -0.4 +0.0
nitrogen source NAG (N); with MOPS -0.0 -0.4 -0.4 +0.2 +0.3
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 +0.3 -0.2 -0.4 +0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.3 -0.3 +0.3 +0.1 +0.3
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.2 +0.2 +0.3 -0.1 +0.4
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.0 -0.1 +0.6 +0.2 +0.4
phage P. putida South MOI 10 +0.4 +0.2 +0.2 -0.0 +0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +0.0 +0.2 +0.2 +0.5 +0.4
phage PUT8 MOI 10 +0.2 +0.2 +0.2 +0.3 +0.4
carbon source Sorghum Hydrolysate (C) +0.3 +0.4 +0.2 +0.1 +0.3
phage P. put South MOI 10 +0.3 -0.2 +0.3 +0.5 +0.4
phage P. putida compost MOI 0.1 +0.3 +0.2 +0.4 +0.3 +0.3
nitrogen source 2,6-diaminopimelic (N) +0.5 +0.7 +0.3 +0.4 -0.0
phage P. putida Sci Big MOI 0.1 +0.2 +0.3 +0.7 +0.3 +0.8
phage P. putida Sci small MOI 0.1 +0.6 +0.4 +0.4 +0.2 +0.6
phage P. putida Sci small MOI 0.1 +0.5 +0.8 +0.6 +0.5 -0.2
phage P. putida PUT 7 MOI 1 +0.8 +0.7 +0.9 +0.8 +0.7
phage P. putida Missley MOI 0.1 +1.0 +1.1 +1.2 +1.0 +1.0
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